Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
RC3H2Q9HBD1 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC22■■□□□ 1.11
RC3H2Q9HBD1 AC087499.1-201ENST00000418141 1075 ntBASIC22■■□□□ 1.11
RC3H2Q9HBD1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC22■■□□□ 1.11
RC3H2Q9HBD1 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC22■■□□□ 1.11
RC3H2Q9HBD1 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC22■■□□□ 1.11
RC3H2Q9HBD1 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC22■■□□□ 1.11
RC3H2Q9HBD1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC22■■□□□ 1.11
RC3H2Q9HBD1 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
RC3H2Q9HBD1 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H2Q9HBD1 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H2Q9HBD1 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 AC097493.4-201ENST00000641197 219 ntBASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
RC3H2Q9HBD1 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 AL355075.4-201ENST00000554988 638 ntBASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
RC3H2Q9HBD1 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 KRT18P21-201ENST00000515767 1272 ntBASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 PRKY-204ENST00000533551 1019 ntBASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RC3H2Q9HBD1 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.95■■□□□ 1.11
RC3H2Q9HBD1 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.95■■□□□ 1.11
RC3H2Q9HBD1 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
RC3H2Q9HBD1 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms