Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 AC139887.4-201ENST00000607877 719 ntBASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LRFN3Q9BTN0 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 AL121829.2-201ENST00000620908 328 ntBASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN3Q9BTN0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 AC092647.4-201ENST00000457211 535 ntBASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 CR392000.1-201ENST00000624770 1228 ntBASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.67■□□□□ 0.9
LRFN3Q9BTN0 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 TSPY14P-201ENST00000303979 915 ntBASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 TSPY5P-201ENST00000426936 936 ntBASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.66■□□□□ 0.9
LRFN3Q9BTN0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.65■□□□□ 0.9
LRFN3Q9BTN0 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LRFN3Q9BTN0 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LRFN3Q9BTN0 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRFN3Q9BTN0 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.64■□□□□ 0.89
LRFN3Q9BTN0 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.64■□□□□ 0.89
LRFN3Q9BTN0 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.64■□□□□ 0.89
LRFN3Q9BTN0 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.89
LRFN3Q9BTN0 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.64■□□□□ 0.89
LRFN3Q9BTN0 CR769767.2-201ENST00000622735 460 ntBASIC20.64■□□□□ 0.89
LRFN3Q9BTN0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
LRFN3Q9BTN0 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRFN3Q9BTN0 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LRFN3Q9BTN0 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
LRFN3Q9BTN0 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
LRFN3Q9BTN0 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.63■□□□□ 0.89
LRFN3Q9BTN0 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
LRFN3Q9BTN0 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms