Protein–RNA interactions for Protein: Q99616

CCL13, C-C motif chemokine 13, humanhuman

Predictions only

Length 98 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL13Q99616 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.13■□□□□ 0.33
CCL13Q99616 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.13■□□□□ 0.33
CCL13Q99616 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC17.13■□□□□ 0.33
CCL13Q99616 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.13■□□□□ 0.33
CCL13Q99616 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 AC083906.2-201ENST00000511578 360 ntBASIC17.13■□□□□ 0.33
CCL13Q99616 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.13■□□□□ 0.33
CCL13Q99616 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.13■□□□□ 0.33
CCL13Q99616 AC133552.2-202ENST00000575694 574 ntBASIC17.13■□□□□ 0.33
CCL13Q99616 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
CCL13Q99616 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.13■□□□□ 0.33
CCL13Q99616 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.13■□□□□ 0.33
CCL13Q99616 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCL13Q99616 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCL13Q99616 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.12■□□□□ 0.33
CCL13Q99616 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCL13Q99616 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.12■□□□□ 0.33
CCL13Q99616 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC17.12■□□□□ 0.33
CCL13Q99616 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCL13Q99616 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.12■□□□□ 0.33
CCL13Q99616 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.12■□□□□ 0.33
CCL13Q99616 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.12■□□□□ 0.33
CCL13Q99616 AL121832.2-201ENST00000610979 668 ntBASIC17.12■□□□□ 0.33
CCL13Q99616 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCL13Q99616 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCL13Q99616 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCL13Q99616 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCL13Q99616 AC027702.1-201ENST00000563810 1770 ntBASIC17.12■□□□□ 0.33
CCL13Q99616 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCL13Q99616 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCL13Q99616 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCL13Q99616 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCL13Q99616 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCL13Q99616 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCL13Q99616 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
CCL13Q99616 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
CCL13Q99616 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.11■□□□□ 0.33
CCL13Q99616 NCF1B-203ENST00000435988 1254 ntBASIC17.11■□□□□ 0.33
CCL13Q99616 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.11■□□□□ 0.33
CCL13Q99616 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.11■□□□□ 0.33
CCL13Q99616 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC17.11■□□□□ 0.33
CCL13Q99616 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC17.11■□□□□ 0.33
CCL13Q99616 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.11■□□□□ 0.33
CCL13Q99616 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.11■□□□□ 0.33
CCL13Q99616 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC17.11■□□□□ 0.33
CCL13Q99616 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCL13Q99616 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCL13Q99616 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCL13Q99616 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.1■□□□□ 0.33
CCL13Q99616 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCL13Q99616 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC17.1■□□□□ 0.33
CCL13Q99616 FP700111.2-201ENST00000619190 1892 ntBASIC17.1■□□□□ 0.33
CCL13Q99616 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCL13Q99616 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCL13Q99616 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCL13Q99616 GPX1P1-201ENST00000388829 606 ntBASIC17.1■□□□□ 0.33
CCL13Q99616 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCL13Q99616 AL512625.2-201ENST00000417533 625 ntBASIC17.1■□□□□ 0.33
CCL13Q99616 AL355472.2-201ENST00000422958 438 ntBASIC17.1■□□□□ 0.33
CCL13Q99616 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.1■□□□□ 0.33
CCL13Q99616 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.1■□□□□ 0.33
CCL13Q99616 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.1■□□□□ 0.33
CCL13Q99616 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCL13Q99616 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.1■□□□□ 0.33
CCL13Q99616 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCL13Q99616 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.1■□□□□ 0.33
CCL13Q99616 AC010980.2-201ENST00000587099 1412 ntBASIC17.1■□□□□ 0.33
CCL13Q99616 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCL13Q99616 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.1■□□□□ 0.33
CCL13Q99616 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCL13Q99616 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCL13Q99616 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms