Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 MCRIP2P1-201ENST00000394346 511 ntBASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 AL355472.2-201ENST00000422958 438 ntBASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.28■□□□□ 0.68
PTCHD1Q96NR3 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
PTCHD1Q96NR3 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTCHD1Q96NR3 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTCHD1Q96NR3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.27■□□□□ 0.68
PTCHD1Q96NR3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTCHD1Q96NR3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.27■□□□□ 0.68
PTCHD1Q96NR3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
PTCHD1Q96NR3 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.27■□□□□ 0.68
PTCHD1Q96NR3 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.27■□□□□ 0.68
PTCHD1Q96NR3 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.27■□□□□ 0.68
PTCHD1Q96NR3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.27■□□□□ 0.67
PTCHD1Q96NR3 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PTCHD1Q96NR3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.27■□□□□ 0.67
PTCHD1Q96NR3 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 AC142086.2-201ENST00000569753 217 ntBASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 MIR4758-201ENST00000577688 71 ntBASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 CYP2T3P-201ENST00000601990 817 ntBASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 CYP21A1P-202ENST00000354927 1481 ntBASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD1Q96NR3 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 LSM12P1-201ENST00000411836 588 ntBASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.25■□□□□ 0.67
PTCHD1Q96NR3 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 KRT18P68-201ENST00000392293 1000 ntBASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms