Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 DUX4L3-201ENST00000630187 1275 ntBASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 DUX4L7-201ENST00000630678 1275 ntBASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 DUX4L5-201ENST00000630834 1275 ntBASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLHC1Q8NHS4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 CCDC92B-201ENST00000575506 885 ntBASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.61■□□□□ 0.73
CLHC1Q8NHS4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 YBX1P1-201ENST00000445822 960 ntBASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 TERF1P2-201ENST00000583350 1212 ntBASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLHC1Q8NHS4 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 AC123595.1-201ENST00000440769 1046 ntBASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 AC004854.2-201ENST00000608450 1441 ntBASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.59■□□□□ 0.73
CLHC1Q8NHS4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLHC1Q8NHS4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLHC1Q8NHS4 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLHC1Q8NHS4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLHC1Q8NHS4 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.58■□□□□ 0.73
CLHC1Q8NHS4 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLHC1Q8NHS4 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.58■□□□□ 0.73
CLHC1Q8NHS4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.58■□□□□ 0.73
CLHC1Q8NHS4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.58■□□□□ 0.73
CLHC1Q8NHS4 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.58■□□□□ 0.73
CLHC1Q8NHS4 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLHC1Q8NHS4 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLHC1Q8NHS4 ZNRF2P3-201ENST00000424200 374 ntBASIC19.58■□□□□ 0.72
CLHC1Q8NHS4 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.58■□□□□ 0.72
CLHC1Q8NHS4 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.58■□□□□ 0.72
CLHC1Q8NHS4 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.58■□□□□ 0.72
CLHC1Q8NHS4 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.58■□□□□ 0.72
CLHC1Q8NHS4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLHC1Q8NHS4 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CLHC1Q8NHS4 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.58■□□□□ 0.72
CLHC1Q8NHS4 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLHC1Q8NHS4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.57■□□□□ 0.72
CLHC1Q8NHS4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLHC1Q8NHS4 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLHC1Q8NHS4 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLHC1Q8NHS4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLHC1Q8NHS4 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.57■□□□□ 0.72
CLHC1Q8NHS4 KRT18P14-201ENST00000534205 1250 ntBASIC19.57■□□□□ 0.72
CLHC1Q8NHS4 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms