Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 AL390961.4-201ENST00000623958 2535 ntBASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 TNRC18P3-201ENST00000441896 2691 ntBASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 MIR4449-201ENST00000578365 66 ntBASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 SMPD5-203ENST00000639008 1464 ntBASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN3Q8NCR9 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
CLRN3Q8NCR9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.33■□□□□ 0.21
CLRN3Q8NCR9 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLRN3Q8NCR9 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN3Q8NCR9 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CLRN3Q8NCR9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN3Q8NCR9 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.32■□□□□ 0.2
CLRN3Q8NCR9 RPS2-202ENST00000526522 924 ntTSL 2 BASIC16.32■□□□□ 0.2
CLRN3Q8NCR9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN3Q8NCR9 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN3Q8NCR9 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN3Q8NCR9 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN3Q8NCR9 AC104581.1-202ENST00000635932 2618 ntBASIC16.32■□□□□ 0.2
CLRN3Q8NCR9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 TPT1-202ENST00000379055 948 ntTSL 2 BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN3Q8NCR9 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CLRN3Q8NCR9 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC16.3■□□□□ 0.2
CLRN3Q8NCR9 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN3Q8NCR9 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN3Q8NCR9 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN3Q8NCR9 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLRN3Q8NCR9 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.3■□□□□ 0.2
CLRN3Q8NCR9 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms