Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 CYP21A1P-202ENST00000354927 1481 ntBASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 AL121832.2-201ENST00000610979 668 ntBASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
SCUBE3Q8IX30 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.52■■□□□ 1.04
SCUBE3Q8IX30 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
SCUBE3Q8IX30 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.52■■□□□ 1.04
SCUBE3Q8IX30 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SCUBE3Q8IX30 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SCUBE3Q8IX30 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.52■■□□□ 1.04
SCUBE3Q8IX30 AL355472.2-201ENST00000422958 438 ntBASIC21.52■■□□□ 1.04
SCUBE3Q8IX30 AC100791.3-201ENST00000617619 330 ntBASIC21.52■■□□□ 1.04
SCUBE3Q8IX30 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SCUBE3Q8IX30 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.52■■□□□ 1.04
SCUBE3Q8IX30 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SCUBE3Q8IX30 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.52■■□□□ 1.03
SCUBE3Q8IX30 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SCUBE3Q8IX30 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
SCUBE3Q8IX30 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 ABHD17AP1-201ENST00000358206 933 ntBASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 MCRIP2P1-201ENST00000394346 511 ntBASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 MIR2861-201ENST00000636310 90 ntBASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SCUBE3Q8IX30 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 GPX1P1-201ENST00000388829 606 ntBASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 MKRN4P-201ENST00000444706 1521 ntBASIC21.5■■□□□ 1.03
SCUBE3Q8IX30 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.49■■□□□ 1.03
SCUBE3Q8IX30 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms