Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 AC110285.5-201ENST00000611501 352 ntBASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC16.93■□□□□ 0.3
CSPG4Q6UVK1 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 NTF6B-201ENST00000591913 560 ntBASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 AC145285.6-201ENST00000604632 637 ntBASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 ME2-206ENST00000638410 2289 ntTSL 5 BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 ME2-210ENST00000639255 2262 ntTSL 5 BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 TPM4P1-201ENST00000436100 807 ntBASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CSPG4Q6UVK1 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 KRASP1-201ENST00000407852 552 ntBASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 KRT18P57-201ENST00000443599 1254 ntBASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.91■□□□□ 0.3
CSPG4Q6UVK1 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 AC068473.5-201ENST00000616428 2072 ntBASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms