Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 FEM1AP1-201ENST00000431297 1995 ntBASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 AC073130.3-201ENST00000624389 2278 ntBASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TRIM40Q6P9F5 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM40Q6P9F5 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 AL162412.1-201ENST00000567129 965 ntBASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM40Q6P9F5 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 AC007322.1-201ENST00000426983 750 ntBASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 CNN2P6-201ENST00000439038 900 ntBASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 AC080038.1-201ENST00000611274 1154 ntBASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 SLC25A24-204ENST00000569674 2357 ntBASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 LINC01006-201ENST00000333319 2292 ntBASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms