Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.61■□□□□ 0.57
NIPAL3Q6P499 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.61■□□□□ 0.57
NIPAL3Q6P499 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.61■□□□□ 0.57
NIPAL3Q6P499 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NIPAL3Q6P499 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.61■□□□□ 0.57
NIPAL3Q6P499 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.61■□□□□ 0.57
NIPAL3Q6P499 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.61■□□□□ 0.57
NIPAL3Q6P499 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NIPAL3Q6P499 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
NIPAL3Q6P499 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
NIPAL3Q6P499 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.61■□□□□ 0.57
NIPAL3Q6P499 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NIPAL3Q6P499 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 SLC7A5P2-201ENST00000553010 536 ntBASIC18.59■□□□□ 0.57
NIPAL3Q6P499 AC137761.2-201ENST00000561729 223 ntBASIC18.59■□□□□ 0.57
NIPAL3Q6P499 AC145350.3-201ENST00000569033 163 ntBASIC18.59■□□□□ 0.57
NIPAL3Q6P499 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NIPAL3Q6P499 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NIPAL3Q6P499 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NIPAL3Q6P499 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
NIPAL3Q6P499 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
NIPAL3Q6P499 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
NIPAL3Q6P499 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NIPAL3Q6P499 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.58■□□□□ 0.57
NIPAL3Q6P499 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.58■□□□□ 0.57
NIPAL3Q6P499 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.58■□□□□ 0.57
NIPAL3Q6P499 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
NIPAL3Q6P499 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 KRT18P20-201ENST00000548986 1279 ntBASIC18.58■□□□□ 0.56
NIPAL3Q6P499 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.58■□□□□ 0.56
NIPAL3Q6P499 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 AC016769.1-201ENST00000409132 1010 ntBASIC18.57■□□□□ 0.56
NIPAL3Q6P499 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms