Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR4497-201ENST00000583208 89 ntBASIC20.8■□□□□ 0.92
USP39Q53GS9 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.8■□□□□ 0.92
USP39Q53GS9 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
USP39Q53GS9 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USP39Q53GS9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP39Q53GS9 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP39Q53GS9 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP39Q53GS9 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP39Q53GS9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP39Q53GS9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.8■□□□□ 0.92
USP39Q53GS9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.79■□□□□ 0.92
USP39Q53GS9 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
USP39Q53GS9 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.79■□□□□ 0.92
USP39Q53GS9 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.79■□□□□ 0.92
USP39Q53GS9 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
USP39Q53GS9 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.79■□□□□ 0.92
USP39Q53GS9 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.79■□□□□ 0.92
USP39Q53GS9 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.79■□□□□ 0.92
USP39Q53GS9 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP39Q53GS9 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
USP39Q53GS9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.78■□□□□ 0.92
USP39Q53GS9 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
USP39Q53GS9 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.78■□□□□ 0.92
USP39Q53GS9 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.78■□□□□ 0.92
USP39Q53GS9 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
USP39Q53GS9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
USP39Q53GS9 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 FAM99A-202ENST00000538190 1989 ntBASIC20.78■□□□□ 0.92
USP39Q53GS9 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.78■□□□□ 0.92
USP39Q53GS9 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.78■□□□□ 0.92
USP39Q53GS9 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.78■□□□□ 0.92
USP39Q53GS9 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.78■□□□□ 0.92
USP39Q53GS9 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.78■□□□□ 0.92
USP39Q53GS9 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.78■□□□□ 0.92
USP39Q53GS9 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.78■□□□□ 0.92
USP39Q53GS9 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.78■□□□□ 0.92
USP39Q53GS9 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
USP39Q53GS9 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP39Q53GS9 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
USP39Q53GS9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.77■□□□□ 0.92
USP39Q53GS9 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.77■□□□□ 0.92
USP39Q53GS9 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
USP39Q53GS9 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP39Q53GS9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP39Q53GS9 AC007322.3-201ENST00000426526 701 ntBASIC20.77■□□□□ 0.92
USP39Q53GS9 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP39Q53GS9 SOX15-203ENST00000570788 1093 ntBASIC20.77■□□□□ 0.92
USP39Q53GS9 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP39Q53GS9 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
USP39Q53GS9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
USP39Q53GS9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.77■□□□□ 0.91
USP39Q53GS9 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
USP39Q53GS9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.77■□□□□ 0.91
USP39Q53GS9 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
USP39Q53GS9 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.91
USP39Q53GS9 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
USP39Q53GS9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP39Q53GS9 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP39Q53GS9 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
USP39Q53GS9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP39Q53GS9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
USP39Q53GS9 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP39Q53GS9 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP39Q53GS9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP39Q53GS9 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP39Q53GS9 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
USP39Q53GS9 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.76■□□□□ 0.91
USP39Q53GS9 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.76■□□□□ 0.91
USP39Q53GS9 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.76■□□□□ 0.91
USP39Q53GS9 AC073912.3-201ENST00000624414 853 ntBASIC20.76■□□□□ 0.91
USP39Q53GS9 AL137060.1-201ENST00000618151 2648 ntBASIC20.76■□□□□ 0.91
USP39Q53GS9 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP39Q53GS9 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.76■□□□□ 0.91
USP39Q53GS9 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP39Q53GS9 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms