Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
CCDC144BQ3MJ40 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC144BQ3MJ40 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC144BQ3MJ40 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC144BQ3MJ40 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC144BQ3MJ40 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC144BQ3MJ40 ADM-205ENST00000528544 586 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC144BQ3MJ40 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC144BQ3MJ40 LINC01006-201ENST00000333319 2292 ntBASIC23.73■■□□□ 1.39
CCDC144BQ3MJ40 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
CCDC144BQ3MJ40 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC144BQ3MJ40 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 RPS2P52-201ENST00000469610 820 ntBASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC144BQ3MJ40 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 AC098590.1-201ENST00000468126 897 ntBASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC144BQ3MJ40 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.7■■□□□ 1.39
CCDC144BQ3MJ40 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC23.7■■□□□ 1.39
CCDC144BQ3MJ40 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
CCDC144BQ3MJ40 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
CCDC144BQ3MJ40 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 GAS7-202ENST00000396115 929 ntTSL 5 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 OR2A1-AS1-201ENST00000462305 773 ntBASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
CCDC144BQ3MJ40 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.69■■□□□ 1.38
CCDC144BQ3MJ40 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC144BQ3MJ40 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC23.68■■□□□ 1.38
CCDC144BQ3MJ40 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC23.68■■□□□ 1.38
CCDC144BQ3MJ40 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CCDC144BQ3MJ40 INO80E-214ENST00000620599 515 ntTSL 2 BASIC23.68■■□□□ 1.38
CCDC144BQ3MJ40 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC144BQ3MJ40 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC144BQ3MJ40 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC144BQ3MJ40 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC144BQ3MJ40 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC144BQ3MJ40 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.67■■□□□ 1.38
CCDC144BQ3MJ40 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC144BQ3MJ40 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC144BQ3MJ40 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms