Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC12.84□□□□□ -0.35
HSPG2P98160 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC12.84□□□□□ -0.35
HSPG2P98160 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HSPG2P98160 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
HSPG2P98160 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HSPG2P98160 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC12.84□□□□□ -0.35
HSPG2P98160 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 AC092053.2-201ENST00000640557 1818 ntBASIC12.84□□□□□ -0.35
HSPG2P98160 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HSPG2P98160 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC12.84□□□□□ -0.35
HSPG2P98160 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC12.84□□□□□ -0.35
HSPG2P98160 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC12.84□□□□□ -0.35
HSPG2P98160 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HSPG2P98160 AC245052.3-201ENST00000450182 901 ntBASIC12.84□□□□□ -0.35
HSPG2P98160 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC12.84□□□□□ -0.35
HSPG2P98160 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC12.84□□□□□ -0.35
HSPG2P98160 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
HSPG2P98160 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC12.83□□□□□ -0.35
HSPG2P98160 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
HSPG2P98160 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
HSPG2P98160 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC12.83□□□□□ -0.35
HSPG2P98160 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC12.83□□□□□ -0.35
HSPG2P98160 AC010203.1-204ENST00000548782 407 ntBASIC12.83□□□□□ -0.35
HSPG2P98160 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC12.83□□□□□ -0.35
HSPG2P98160 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC12.83□□□□□ -0.35
HSPG2P98160 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
HSPG2P98160 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC12.83□□□□□ -0.36
HSPG2P98160 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
HSPG2P98160 FAM87A-204ENST00000613235 858 ntBASIC12.83□□□□□ -0.36
HSPG2P98160 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC12.83□□□□□ -0.36
HSPG2P98160 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
HSPG2P98160 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 PVRIG2P-201ENST00000435460 978 ntBASIC12.83□□□□□ -0.36
HSPG2P98160 NAPSB-206ENST00000562112 1266 ntBASIC12.83□□□□□ -0.36
HSPG2P98160 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
HSPG2P98160 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC12.83□□□□□ -0.36
HSPG2P98160 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC12.83□□□□□ -0.36
HSPG2P98160 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC12.83□□□□□ -0.36
HSPG2P98160 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HSPG2P98160 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC12.83□□□□□ -0.36
HSPG2P98160 VPS72-207ENST00000640458 689 ntTSL 5 BASIC12.83□□□□□ -0.36
HSPG2P98160 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC12.82□□□□□ -0.36
HSPG2P98160 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
HSPG2P98160 IPPK-202ENST00000375522 882 ntTSL 3 BASIC12.82□□□□□ -0.36
HSPG2P98160 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
HSPG2P98160 KRT18P16-201ENST00000510337 1294 ntBASIC12.82□□□□□ -0.36
HSPG2P98160 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC12.82□□□□□ -0.36
HSPG2P98160 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC12.82□□□□□ -0.36
HSPG2P98160 CLN6-214ENST00000636314 442 ntTSL 3 BASIC12.82□□□□□ -0.36
HSPG2P98160 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
HSPG2P98160 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HSPG2P98160 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HSPG2P98160 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC12.82□□□□□ -0.36
HSPG2P98160 NBPF21P-201ENST00000425093 1451 ntBASIC12.82□□□□□ -0.36
HSPG2P98160 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC12.82□□□□□ -0.36
HSPG2P98160 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HSPG2P98160 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC12.82□□□□□ -0.36
HSPG2P98160 HCG4P8-203ENST00000443049 980 ntBASIC12.82□□□□□ -0.36
HSPG2P98160 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC12.82□□□□□ -0.36
HSPG2P98160 F2R-202ENST00000505600 442 ntTSL 2 BASIC12.82□□□□□ -0.36
HSPG2P98160 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC12.82□□□□□ -0.36
HSPG2P98160 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC12.82□□□□□ -0.36
HSPG2P98160 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HSPG2P98160 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HSPG2P98160 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HSPG2P98160 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC12.82□□□□□ -0.36
HSPG2P98160 MED25-212ENST00000618715 1467 ntTSL 5 BASIC12.81□□□□□ -0.36
HSPG2P98160 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HSPG2P98160 AC087742.1-201ENST00000575880 1738 ntBASIC12.81□□□□□ -0.36
HSPG2P98160 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HSPG2P98160 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HSPG2P98160 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HSPG2P98160 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HSPG2P98160 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC12.81□□□□□ -0.36
HSPG2P98160 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HSPG2P98160 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms