Protein–RNA interactions for Protein: P60228

EIF3E, Eukaryotic translation initiation factor 3 subunit E, humanhuman

Known RBP Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3EP60228 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
EIF3EP60228 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
EIF3EP60228 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
EIF3EP60228 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
EIF3EP60228 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.11■□□□□ 0.97
EIF3EP60228 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
EIF3EP60228 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.11■□□□□ 0.97
EIF3EP60228 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.11■□□□□ 0.97
EIF3EP60228 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
EIF3EP60228 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
EIF3EP60228 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
EIF3EP60228 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
EIF3EP60228 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
EIF3EP60228 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
EIF3EP60228 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
EIF3EP60228 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
EIF3EP60228 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.1■□□□□ 0.97
EIF3EP60228 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
EIF3EP60228 AC092720.2-201ENST00000602388 1665 ntBASIC21.1■□□□□ 0.97
EIF3EP60228 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.1■□□□□ 0.97
EIF3EP60228 AC091799.1-201ENST00000422823 811 ntBASIC21.1■□□□□ 0.97
EIF3EP60228 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.1■□□□□ 0.97
EIF3EP60228 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
EIF3EP60228 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.1■□□□□ 0.97
EIF3EP60228 SLC7A5P1-201ENST00000568957 537 ntBASIC21.1■□□□□ 0.97
EIF3EP60228 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.1■□□□□ 0.97
EIF3EP60228 AC243732.1-201ENST00000612648 864 ntBASIC21.1■□□□□ 0.97
EIF3EP60228 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
EIF3EP60228 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.1■□□□□ 0.97
EIF3EP60228 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.1■□□□□ 0.97
EIF3EP60228 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
EIF3EP60228 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.1■□□□□ 0.97
EIF3EP60228 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
EIF3EP60228 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
EIF3EP60228 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
EIF3EP60228 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.1■□□□□ 0.97
EIF3EP60228 AL162377.1-201ENST00000618844 1793 ntBASIC21.1■□□□□ 0.97
EIF3EP60228 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
EIF3EP60228 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
EIF3EP60228 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
EIF3EP60228 AC019069.1-201ENST00000610008 1333 ntBASIC21.09■□□□□ 0.97
EIF3EP60228 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
EIF3EP60228 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.09■□□□□ 0.97
EIF3EP60228 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.09■□□□□ 0.97
EIF3EP60228 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
EIF3EP60228 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
EIF3EP60228 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
EIF3EP60228 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
EIF3EP60228 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
EIF3EP60228 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
EIF3EP60228 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
EIF3EP60228 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.09■□□□□ 0.97
EIF3EP60228 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.09■□□□□ 0.97
EIF3EP60228 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.09■□□□□ 0.97
EIF3EP60228 MIR2861-201ENST00000636310 90 ntBASIC21.09■□□□□ 0.97
EIF3EP60228 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
EIF3EP60228 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
EIF3EP60228 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
EIF3EP60228 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
EIF3EP60228 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
EIF3EP60228 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
EIF3EP60228 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.08■□□□□ 0.97
EIF3EP60228 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
EIF3EP60228 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
EIF3EP60228 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
EIF3EP60228 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.08■□□□□ 0.97
EIF3EP60228 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
EIF3EP60228 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
EIF3EP60228 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
EIF3EP60228 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
EIF3EP60228 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
EIF3EP60228 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.07■□□□□ 0.96
EIF3EP60228 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
EIF3EP60228 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
EIF3EP60228 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
EIF3EP60228 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
EIF3EP60228 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.07■□□□□ 0.96
EIF3EP60228 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.07■□□□□ 0.96
EIF3EP60228 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.07■□□□□ 0.96
EIF3EP60228 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.07■□□□□ 0.96
EIF3EP60228 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
EIF3EP60228 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.07■□□□□ 0.96
EIF3EP60228 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
EIF3EP60228 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
EIF3EP60228 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
EIF3EP60228 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.07■□□□□ 0.96
EIF3EP60228 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.07■□□□□ 0.96
EIF3EP60228 PCDHAC2-203ENST00000615316 3011 ntBASIC21.07■□□□□ 0.96
EIF3EP60228 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
EIF3EP60228 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.06■□□□□ 0.96
EIF3EP60228 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
EIF3EP60228 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
EIF3EP60228 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
EIF3EP60228 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
EIF3EP60228 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.06■□□□□ 0.96
EIF3EP60228 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
EIF3EP60228 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
EIF3EP60228 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.06■□□□□ 0.96
EIF3EP60228 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
EIF3EP60228 UBE2DNL-204ENST00000602536 740 ntBASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms