Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH4P55283 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH4P55283 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CDH4P55283 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CDH4P55283 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH4P55283 AC006128.1-201ENST00000624704 1661 ntBASIC20.97■□□□□ 0.95
CDH4P55283 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH4P55283 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH4P55283 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CDH4P55283 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.97■□□□□ 0.95
CDH4P55283 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.97■□□□□ 0.95
CDH4P55283 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.97■□□□□ 0.95
CDH4P55283 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.97■□□□□ 0.95
CDH4P55283 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.97■□□□□ 0.95
CDH4P55283 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH4P55283 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CDH4P55283 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.96■□□□□ 0.95
CDH4P55283 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.96■□□□□ 0.95
CDH4P55283 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.96■□□□□ 0.95
CDH4P55283 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.96■□□□□ 0.95
CDH4P55283 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CDH4P55283 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.96■□□□□ 0.95
CDH4P55283 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH4P55283 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDH4P55283 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.95■□□□□ 0.94
CDH4P55283 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDH4P55283 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CDH4P55283 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.95■□□□□ 0.94
CDH4P55283 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CDH4P55283 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.95■□□□□ 0.94
CDH4P55283 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.95■□□□□ 0.94
CDH4P55283 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CDH4P55283 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.95■□□□□ 0.94
CDH4P55283 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.95■□□□□ 0.94
CDH4P55283 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.95■□□□□ 0.94
CDH4P55283 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.95■□□□□ 0.94
CDH4P55283 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDH4P55283 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CDH4P55283 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDH4P55283 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CDH4P55283 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.95■□□□□ 0.94
CDH4P55283 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDH4P55283 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.95■□□□□ 0.94
CDH4P55283 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CDH4P55283 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.95■□□□□ 0.94
CDH4P55283 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH4P55283 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH4P55283 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
CDH4P55283 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDH4P55283 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.94■□□□□ 0.94
CDH4P55283 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.94■□□□□ 0.94
CDH4P55283 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.94■□□□□ 0.94
CDH4P55283 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CDH4P55283 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CDH4P55283 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH4P55283 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH4P55283 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDH4P55283 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH4P55283 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH4P55283 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH4P55283 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH4P55283 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.94■□□□□ 0.94
CDH4P55283 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.94■□□□□ 0.94
CDH4P55283 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDH4P55283 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDH4P55283 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.93■□□□□ 0.94
CDH4P55283 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CDH4P55283 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.93■□□□□ 0.94
CDH4P55283 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDH4P55283 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.93■□□□□ 0.94
CDH4P55283 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CDH4P55283 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.93■□□□□ 0.94
CDH4P55283 AC083880.1-201ENST00000608266 535 ntBASIC20.93■□□□□ 0.94
CDH4P55283 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.93■□□□□ 0.94
CDH4P55283 KRT8P36-201ENST00000489121 1440 ntBASIC20.93■□□□□ 0.94
CDH4P55283 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.93■□□□□ 0.94
CDH4P55283 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDH4P55283 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
CDH4P55283 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH4P55283 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
CDH4P55283 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH4P55283 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH4P55283 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.92■□□□□ 0.94
CDH4P55283 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH4P55283 KRT18P6-201ENST00000555540 1265 ntBASIC20.92■□□□□ 0.94
CDH4P55283 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.92■□□□□ 0.94
CDH4P55283 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.92■□□□□ 0.94
CDH4P55283 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms