Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.17■□□□□ 0.66
RFX3P48380 RARRES2P11-201ENST00000635158 484 ntBASIC19.17■□□□□ 0.66
RFX3P48380 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX3P48380 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX3P48380 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.17■□□□□ 0.66
RFX3P48380 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RFX3P48380 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RFX3P48380 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX3P48380 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX3P48380 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RFX3P48380 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.16■□□□□ 0.66
RFX3P48380 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX3P48380 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.16■□□□□ 0.66
RFX3P48380 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX3P48380 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RFX3P48380 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX3P48380 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RFX3P48380 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX3P48380 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX3P48380 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
RFX3P48380 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX3P48380 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX3P48380 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX3P48380 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.15■□□□□ 0.66
RFX3P48380 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX3P48380 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX3P48380 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX3P48380 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX3P48380 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX3P48380 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RFX3P48380 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.15■□□□□ 0.66
RFX3P48380 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.15■□□□□ 0.66
RFX3P48380 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RFX3P48380 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX3P48380 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX3P48380 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX3P48380 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX3P48380 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RFX3P48380 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
RFX3P48380 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.14■□□□□ 0.66
RFX3P48380 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.14■□□□□ 0.66
RFX3P48380 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.14■□□□□ 0.65
RFX3P48380 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.14■□□□□ 0.65
RFX3P48380 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
RFX3P48380 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.14■□□□□ 0.65
RFX3P48380 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.14■□□□□ 0.65
RFX3P48380 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.14■□□□□ 0.65
RFX3P48380 AC022517.1-201ENST00000592429 346 ntBASIC19.14■□□□□ 0.65
RFX3P48380 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.14■□□□□ 0.65
RFX3P48380 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RFX3P48380 AC006128.1-201ENST00000624704 1661 ntBASIC19.14■□□□□ 0.65
RFX3P48380 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.14■□□□□ 0.65
RFX3P48380 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX3P48380 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.13■□□□□ 0.65
RFX3P48380 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.13■□□□□ 0.65
RFX3P48380 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.13■□□□□ 0.65
RFX3P48380 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
RFX3P48380 KRT18P11-201ENST00000435214 1283 ntBASIC19.13■□□□□ 0.65
RFX3P48380 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.13■□□□□ 0.65
RFX3P48380 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.13■□□□□ 0.65
RFX3P48380 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.13■□□□□ 0.65
RFX3P48380 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFX3P48380 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.13■□□□□ 0.65
RFX3P48380 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RFX3P48380 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFX3P48380 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RFX3P48380 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
RFX3P48380 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.12■□□□□ 0.65
RFX3P48380 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RFX3P48380 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.12■□□□□ 0.65
RFX3P48380 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RFX3P48380 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
RFX3P48380 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms