Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 YIL166CYIL166C 1629 nt2.52□□□□□ -2.01
SHP1P34223 SMC6YLR383W 3345 nt2.51□□□□□ -2.01
SHP1P34223 YIL030W-AYIL030W-A 339 nt2.51□□□□□ -2.01
SHP1P34223 RRT1YBL048W 312 nt2.51□□□□□ -2.01
SHP1P34223 YBR076C-AYBR076C-A 267 nt2.51□□□□□ -2.01
SHP1P34223 snR41snR41 95 nt2.51□□□□□ -2.01
SHP1P34223 SPE1YKL184W 1401 nt2.51□□□□□ -2.01
SHP1P34223 GPI17YDR434W 1605 nt2.5□□□□□ -2.01
SHP1P34223 SSY1YDR160W 2559 nt2.5□□□□□ -2.01
SHP1P34223 LAG1YHL003C 1236 nt2.5□□□□□ -2.01
SHP1P34223 BIG1YHR101C 1008 nt2.5□□□□□ -2.01
SHP1P34223 DPB11YJL090C 2295 nt2.5□□□□□ -2.01
SHP1P34223 CLN3YAL040C 1743 nt2.5□□□□□ -2.01
SHP1P34223 DUG2YBR281C 2637 nt2.5□□□□□ -2.01
SHP1P34223 YDR098C-BYDR098C-B 5268 nt2.49□□□□□ -2.01
SHP1P34223 YDR210C-DYDR210C-D 5268 nt2.49□□□□□ -2.01
SHP1P34223 YDR316W-BYDR316W-B 5268 nt2.49□□□□□ -2.01
SHP1P34223 YDR365W-BYDR365W-B 5268 nt2.49□□□□□ -2.01
SHP1P34223 YER138CYER138C 5268 nt2.49□□□□□ -2.01
SHP1P34223 YER160CYER160C 5268 nt2.49□□□□□ -2.01
SHP1P34223 YGR038C-BYGR038C-B 5268 nt2.49□□□□□ -2.01
SHP1P34223 YGR161C-DYGR161C-D 5268 nt2.49□□□□□ -2.01
SHP1P34223 YJR027WYJR027W 5268 nt2.49□□□□□ -2.01
SHP1P34223 YLR157C-BYLR157C-B 5268 nt2.49□□□□□ -2.01
SHP1P34223 YML039WYML039W 5268 nt2.49□□□□□ -2.01
SHP1P34223 YML045WYML045W 5268 nt2.49□□□□□ -2.01
SHP1P34223 YMR050CYMR050C 5268 nt2.49□□□□□ -2.01
SHP1P34223 YOL103W-BYOL103W-B 5268 nt2.49□□□□□ -2.01
SHP1P34223 YBR012W-BYBR012W-B 5271 nt2.49□□□□□ -2.01
SHP1P34223 YOR142W-BYOR142W-B 5268 nt2.49□□□□□ -2.01
SHP1P34223 YPL257W-BYPL257W-B 5268 nt2.49□□□□□ -2.01
SHP1P34223 YPR158W-BYPR158W-B 5271 nt2.49□□□□□ -2.01
SHP1P34223 DNL4YOR005C 2835 nt2.49□□□□□ -2.01
SHP1P34223 IRC4YDR540C 540 nt2.49□□□□□ -2.01
SHP1P34223 GLC7YER133W 939 nt2.49□□□□□ -2.01
SHP1P34223 BRP1YGL007W 378 nt2.49□□□□□ -2.01
SHP1P34223 YGR042WYGR042W 816 nt2.49□□□□□ -2.01
SHP1P34223 NOP19YGR251W 591 nt2.49□□□□□ -2.01
SHP1P34223 PEP8YJL053W 1140 nt2.49□□□□□ -2.01
SHP1P34223 YJR023CYJR023C 402 nt2.49□□□□□ -2.01
SHP1P34223 AIM29YKR074W 468 nt2.49□□□□□ -2.01
SHP1P34223 NOP15YNL110C 663 nt2.49□□□□□ -2.01
SHP1P34223 YNL324WYNL324W 396 nt2.49□□□□□ -2.01
SHP1P34223 UBP15YMR304W 3693 nt2.49□□□□□ -2.01
SHP1P34223 ECM5YMR176W 4236 nt2.49□□□□□ -2.01
SHP1P34223 MUD2YKL074C 1584 nt2.49□□□□□ -2.01
SHP1P34223 INP53YOR109W 3324 nt2.48□□□□□ -2.01
SHP1P34223 HMLALPHA2YCL067C 633 nt2.48□□□□□ -2.01
SHP1P34223 MATALPHA2YCR039C 633 nt2.48□□□□□ -2.01
SHP1P34223 YER189WYER189W 369 nt2.48□□□□□ -2.01
SHP1P34223 YPS5YGL259W 498 nt2.48□□□□□ -2.01
SHP1P34223 ECL1YGR146C 636 nt2.48□□□□□ -2.01
SHP1P34223 CMS1YLR003C 876 nt2.48□□□□□ -2.01
SHP1P34223 RGM1YMR182C 636 nt2.48□□□□□ -2.01
SHP1P34223 FPR1YNL135C 345 nt2.48□□□□□ -2.01
SHP1P34223 RPB11YOL005C 363 nt2.48□□□□□ -2.01
SHP1P34223 GDS1YOR355W 1569 nt2.48□□□□□ -2.01
SHP1P34223 SSE1YPL106C 2082 nt2.48□□□□□ -2.01
SHP1P34223 YDR239CYDR239C 2364 nt2.47□□□□□ -2.01
SHP1P34223 PRP8YHR165C 7242 nt2.47□□□□□ -2.01
SHP1P34223 NDD1YOR372C 1665 nt2.47□□□□□ -2.01
SHP1P34223 FIR1YER032W 2631 nt2.47□□□□□ -2.01
SHP1P34223 snR76snR76 109 nt2.47□□□□□ -2.01
SHP1P34223 HYP2YEL034W 474 nt2.47□□□□□ -2.01
SHP1P34223 SMB1YER029C 591 nt2.47□□□□□ -2.01
SHP1P34223 TPM2YIL138C 486 nt2.47□□□□□ -2.01
SHP1P34223 YML108WYML108W 318 nt2.47□□□□□ -2.01
SHP1P34223 YMR052C-AYMR052C-A 366 nt2.47□□□□□ -2.01
SHP1P34223 YHR214C-CYHR214C-C 1437 nt2.47□□□□□ -2.01
SHP1P34223 SAP190YKR028W 3102 nt2.47□□□□□ -2.01
SHP1P34223 SCD5YOR329C 2619 nt2.47□□□□□ -2.01
SHP1P34223 PUT3YKL015W 2940 nt2.47□□□□□ -2.01
SHP1P34223 ROY1YMR258C 1662 nt2.47□□□□□ -2.01
SHP1P34223 TPS2YDR074W 2691 nt2.46□□□□□ -2.01
SHP1P34223 YBT1YLL048C 4986 nt2.46□□□□□ -2.02
SHP1P34223 MDM32YOR147W 1869 nt2.46□□□□□ -2.02
SHP1P34223 ESC1YMR219W 4977 nt2.46□□□□□ -2.02
SHP1P34223 YAL026C-AYAL026C-A 438 nt2.46□□□□□ -2.02
SHP1P34223 RMP1YLR145W 606 nt2.46□□□□□ -2.02
SHP1P34223 YLR154W-EYLR154W-E 204 nt2.46□□□□□ -2.02
SHP1P34223 RPL37AYLR185W 267 nt2.46□□□□□ -2.02
SHP1P34223 YLR255CYLR255C 354 nt2.46□□□□□ -2.02
SHP1P34223 URA10YMR271C 684 nt2.46□□□□□ -2.02
SHP1P34223 YPL197CYPL197C 414 nt2.46□□□□□ -2.02
SHP1P34223 TRM7YBR061C 933 nt2.46□□□□□ -2.02
SHP1P34223 YKR078WYKR078W 1758 nt2.46□□□□□ -2.02
SHP1P34223 LEU3YLR451W 2661 nt2.45□□□□□ -2.02
SHP1P34223 PSO2YMR137C 1986 nt2.45□□□□□ -2.02
SHP1P34223 MET6YER091C 2304 nt2.45□□□□□ -2.02
SHP1P34223 BNR1YIL159W 4128 nt2.45□□□□□ -2.02
SHP1P34223 GCN4YEL009C 846 nt2.45□□□□□ -2.02
SHP1P34223 YGL165CYGL165C 579 nt2.45□□□□□ -2.02
SHP1P34223 YJR079WYJR079W 330 nt2.45□□□□□ -2.02
SHP1P34223 PSK2YOL045W 3306 nt2.44□□□□□ -2.02
SHP1P34223 YEL018C-AYEL018C-A 534 nt2.44□□□□□ -2.02
SHP1P34223 EMP24YGL200C 612 nt2.44□□□□□ -2.02
SHP1P34223 YIL058WYIL058W 285 nt2.44□□□□□ -2.02
SHP1P34223 HYR1YIR037W 492 nt2.44□□□□□ -2.02
SHP1P34223 YAL042C-AYAL042C-A 378 nt2.44□□□□□ -2.02
SHP1P34223 RPL25YOL127W 429 nt2.44□□□□□ -2.02
Retrieved 100 of 7,029 protein–RNA pairs in 20.1 ms