Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC23.13■■□□□ 1.29
CIITAP33076 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC23.13■■□□□ 1.29
CIITAP33076 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
CIITAP33076 AC097658.1-201ENST00000475555 843 ntBASIC23.13■■□□□ 1.29
CIITAP33076 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC23.13■■□□□ 1.29
CIITAP33076 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.13■■□□□ 1.29
CIITAP33076 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CIITAP33076 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CIITAP33076 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
CIITAP33076 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.12■■□□□ 1.29
CIITAP33076 SERPINH1P1-201ENST00000419794 1249 ntBASIC23.12■■□□□ 1.29
CIITAP33076 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC23.12■■□□□ 1.29
CIITAP33076 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.12■■□□□ 1.29
CIITAP33076 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC23.12■■□□□ 1.29
CIITAP33076 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23.12■■□□□ 1.29
CIITAP33076 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.12■■□□□ 1.29
CIITAP33076 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CIITAP33076 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC23.12■■□□□ 1.29
CIITAP33076 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC23.12■■□□□ 1.29
CIITAP33076 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC23.12■■□□□ 1.29
CIITAP33076 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CIITAP33076 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC23.12■■□□□ 1.29
CIITAP33076 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CIITAP33076 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
CIITAP33076 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CIITAP33076 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CIITAP33076 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC23.11■■□□□ 1.29
CIITAP33076 NXN-202ENST00000537628 1340 ntTSL 3 BASIC23.11■■□□□ 1.29
CIITAP33076 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC23.11■■□□□ 1.29
CIITAP33076 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CIITAP33076 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CIITAP33076 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.11■■□□□ 1.29
CIITAP33076 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.11■■□□□ 1.29
CIITAP33076 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
CIITAP33076 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
CIITAP33076 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CIITAP33076 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CIITAP33076 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CIITAP33076 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CIITAP33076 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC23.11■■□□□ 1.29
CIITAP33076 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CIITAP33076 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CIITAP33076 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
CIITAP33076 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CIITAP33076 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CIITAP33076 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC23.1■■□□□ 1.29
CIITAP33076 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC23.1■■□□□ 1.29
CIITAP33076 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC23.1■■□□□ 1.29
CIITAP33076 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CIITAP33076 NME6-213ENST00000451657 871 ntTSL 2 BASIC23.1■■□□□ 1.29
CIITAP33076 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.1■■□□□ 1.29
CIITAP33076 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CIITAP33076 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CIITAP33076 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CIITAP33076 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
CIITAP33076 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CIITAP33076 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.09■■□□□ 1.29
CIITAP33076 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CIITAP33076 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CIITAP33076 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CIITAP33076 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC23.09■■□□□ 1.29
CIITAP33076 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.09■■□□□ 1.29
CIITAP33076 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC23.09■■□□□ 1.29
CIITAP33076 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CIITAP33076 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC23.09■■□□□ 1.29
CIITAP33076 AL137060.1-201ENST00000618151 2648 ntBASIC23.09■■□□□ 1.29
CIITAP33076 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.09■■□□□ 1.29
CIITAP33076 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.08■■□□□ 1.29
CIITAP33076 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CIITAP33076 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CIITAP33076 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CIITAP33076 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CIITAP33076 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.08■■□□□ 1.29
CIITAP33076 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CIITAP33076 KRT18P6-201ENST00000555540 1265 ntBASIC23.08■■□□□ 1.29
CIITAP33076 C2orf69P4-201ENST00000565394 541 ntBASIC23.08■■□□□ 1.29
CIITAP33076 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.08■■□□□ 1.29
CIITAP33076 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC23.08■■□□□ 1.29
CIITAP33076 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CIITAP33076 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CIITAP33076 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CIITAP33076 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CIITAP33076 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.08■■□□□ 1.29
CIITAP33076 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
CIITAP33076 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
CIITAP33076 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms