Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
LIMS3P0CW19 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.18■□□□□ 0.5
LIMS3P0CW19 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.18■□□□□ 0.5
LIMS3P0CW19 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.18■□□□□ 0.5
LIMS3P0CW19 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LIMS3P0CW19 AC131281.2-201ENST00000520478 145 ntBASIC18.18■□□□□ 0.5
LIMS3P0CW19 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.18■□□□□ 0.5
LIMS3P0CW19 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 AC105233.4-201ENST00000642045 216 ntBASIC18.18■□□□□ 0.5
LIMS3P0CW19 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
LIMS3P0CW19 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LIMS3P0CW19 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
LIMS3P0CW19 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LIMS3P0CW19 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMS3P0CW19 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
LIMS3P0CW19 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.17■□□□□ 0.5
LIMS3P0CW19 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
LIMS3P0CW19 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
LIMS3P0CW19 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.17■□□□□ 0.5
LIMS3P0CW19 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LIMS3P0CW19 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
LIMS3P0CW19 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMS3P0CW19 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMS3P0CW19 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMS3P0CW19 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMS3P0CW19 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMS3P0CW19 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 AL356441.2-201ENST00000443009 864 ntBASIC18.16■□□□□ 0.5
LIMS3P0CW19 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMS3P0CW19 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMS3P0CW19 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMS3P0CW19 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMS3P0CW19 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
LIMS3P0CW19 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMS3P0CW19 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.15■□□□□ 0.5
LIMS3P0CW19 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
LIMS3P0CW19 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.15■□□□□ 0.5
LIMS3P0CW19 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.15■□□□□ 0.5
LIMS3P0CW19 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.15■□□□□ 0.5
LIMS3P0CW19 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMS3P0CW19 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
LIMS3P0CW19 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.14■□□□□ 0.49
LIMS3P0CW19 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMS3P0CW19 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMS3P0CW19 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMS3P0CW19 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
LIMS3P0CW19 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMS3P0CW19 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
LIMS3P0CW19 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.14■□□□□ 0.49
LIMS3P0CW19 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMS3P0CW19 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIMS3P0CW19 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIMS3P0CW19 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMS3P0CW19 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMS3P0CW19 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms