Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SIX3O95343 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SIX3O95343 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SIX3O95343 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20■□□□□ 0.79
SIX3O95343 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SIX3O95343 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20■□□□□ 0.79
SIX3O95343 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SIX3O95343 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20■□□□□ 0.79
SIX3O95343 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20■□□□□ 0.79
SIX3O95343 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20■□□□□ 0.79
SIX3O95343 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SIX3O95343 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20■□□□□ 0.79
SIX3O95343 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20■□□□□ 0.79
SIX3O95343 AC099778.1-201ENST00000568593 1911 ntBASIC20■□□□□ 0.79
SIX3O95343 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SIX3O95343 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SIX3O95343 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SIX3O95343 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SIX3O95343 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SIX3O95343 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SIX3O95343 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SIX3O95343 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SIX3O95343 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SIX3O95343 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.99■□□□□ 0.79
SIX3O95343 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.99■□□□□ 0.79
SIX3O95343 AC092720.2-201ENST00000602388 1665 ntBASIC19.99■□□□□ 0.79
SIX3O95343 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.99■□□□□ 0.79
SIX3O95343 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SIX3O95343 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SIX3O95343 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.99■□□□□ 0.79
SIX3O95343 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SIX3O95343 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SIX3O95343 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.99■□□□□ 0.79
SIX3O95343 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
SIX3O95343 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SIX3O95343 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.98■□□□□ 0.79
SIX3O95343 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.98■□□□□ 0.79
SIX3O95343 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
SIX3O95343 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.98■□□□□ 0.79
SIX3O95343 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.98■□□□□ 0.79
SIX3O95343 KRT18P20-201ENST00000548986 1279 ntBASIC19.98■□□□□ 0.79
SIX3O95343 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.98■□□□□ 0.79
SIX3O95343 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.98■□□□□ 0.79
SIX3O95343 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.98■□□□□ 0.79
SIX3O95343 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.98■□□□□ 0.79
SIX3O95343 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
SIX3O95343 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SIX3O95343 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SIX3O95343 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SIX3O95343 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.98■□□□□ 0.79
SIX3O95343 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.98■□□□□ 0.79
SIX3O95343 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SIX3O95343 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.97■□□□□ 0.79
SIX3O95343 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SIX3O95343 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SIX3O95343 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SIX3O95343 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SIX3O95343 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
SIX3O95343 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.97■□□□□ 0.79
SIX3O95343 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SIX3O95343 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SIX3O95343 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SIX3O95343 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SIX3O95343 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SIX3O95343 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SIX3O95343 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SIX3O95343 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SIX3O95343 RBM17P2-201ENST00000616397 1405 ntBASIC19.96■□□□□ 0.79
SIX3O95343 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
SIX3O95343 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SIX3O95343 AC091799.1-201ENST00000422823 811 ntBASIC19.96■□□□□ 0.79
SIX3O95343 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.96■□□□□ 0.79
SIX3O95343 MIR2861-201ENST00000636310 90 ntBASIC19.96■□□□□ 0.79
SIX3O95343 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.96■□□□□ 0.79
SIX3O95343 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.96■□□□□ 0.79
SIX3O95343 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SIX3O95343 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SIX3O95343 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SIX3O95343 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.95■□□□□ 0.78
SIX3O95343 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SIX3O95343 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
SIX3O95343 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
SIX3O95343 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.95■□□□□ 0.78
SIX3O95343 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SIX3O95343 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SIX3O95343 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SIX3O95343 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.95■□□□□ 0.78
SIX3O95343 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.95■□□□□ 0.78
SIX3O95343 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms