Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CDKL5O76039 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.8■■□□□ 1.4
CDKL5O76039 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC23.8■■□□□ 1.4
CDKL5O76039 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CDKL5O76039 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CDKL5O76039 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CDKL5O76039 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
CDKL5O76039 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
CDKL5O76039 DUX4L16-201ENST00000555130 1264 ntBASIC23.8■■□□□ 1.4
CDKL5O76039 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC23.8■■□□□ 1.4
CDKL5O76039 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.8■■□□□ 1.4
CDKL5O76039 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
CDKL5O76039 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC23.8■■□□□ 1.4
CDKL5O76039 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CDKL5O76039 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC23.79■■□□□ 1.4
CDKL5O76039 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC23.79■■□□□ 1.4
CDKL5O76039 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CDKL5O76039 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CDKL5O76039 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC23.79■■□□□ 1.4
CDKL5O76039 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CDKL5O76039 AC020907.5-201ENST00000624372 1936 ntBASIC23.79■■□□□ 1.4
CDKL5O76039 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CDKL5O76039 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.79■■□□□ 1.4
CDKL5O76039 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CDKL5O76039 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.79■■□□□ 1.4
CDKL5O76039 AL121603.2-201ENST00000557373 2117 ntBASIC23.79■■□□□ 1.4
CDKL5O76039 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CDKL5O76039 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
CDKL5O76039 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC23.79■■□□□ 1.4
CDKL5O76039 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CDKL5O76039 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CDKL5O76039 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CDKL5O76039 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC23.79■■□□□ 1.4
CDKL5O76039 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC23.79■■□□□ 1.4
CDKL5O76039 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
CDKL5O76039 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC23.78■■□□□ 1.4
CDKL5O76039 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
CDKL5O76039 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC23.78■■□□□ 1.4
CDKL5O76039 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CDKL5O76039 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CDKL5O76039 PARL-206ENST00000435888 1098 ntTSL 5 BASIC23.78■■□□□ 1.4
CDKL5O76039 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC23.78■■□□□ 1.4
CDKL5O76039 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CDKL5O76039 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC23.78■■□□□ 1.4
CDKL5O76039 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CDKL5O76039 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CDKL5O76039 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CDKL5O76039 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
CDKL5O76039 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CDKL5O76039 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.78■■□□□ 1.4
CDKL5O76039 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CDKL5O76039 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC23.77■■□□□ 1.4
CDKL5O76039 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC23.77■■□□□ 1.4
CDKL5O76039 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC23.77■■□□□ 1.4
CDKL5O76039 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
CDKL5O76039 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC23.77■■□□□ 1.4
CDKL5O76039 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC23.77■■□□□ 1.4
CDKL5O76039 PGM5P4-201ENST00000421970 445 ntBASIC23.77■■□□□ 1.4
CDKL5O76039 CNN2P6-201ENST00000439038 900 ntBASIC23.77■■□□□ 1.4
CDKL5O76039 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.77■■□□□ 1.4
CDKL5O76039 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC23.77■■□□□ 1.4
CDKL5O76039 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC23.77■■□□□ 1.4
CDKL5O76039 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC23.77■■□□□ 1.4
CDKL5O76039 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDKL5O76039 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC23.77■■□□□ 1.4
CDKL5O76039 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.76■■□□□ 1.39
CDKL5O76039 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDKL5O76039 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CDKL5O76039 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
CDKL5O76039 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDKL5O76039 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CDKL5O76039 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDKL5O76039 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDKL5O76039 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDKL5O76039 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.76■■□□□ 1.39
CDKL5O76039 MDK-213ENST00000617138 635 ntTSL 2 BASIC23.76■■□□□ 1.39
CDKL5O76039 AC231657.2-201ENST00000624556 255 ntBASIC23.76■■□□□ 1.39
CDKL5O76039 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDKL5O76039 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC23.76■■□□□ 1.39
CDKL5O76039 AC092720.2-201ENST00000602388 1665 ntBASIC23.76■■□□□ 1.39
CDKL5O76039 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CDKL5O76039 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDKL5O76039 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
CDKL5O76039 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC23.75■■□□□ 1.39
CDKL5O76039 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CDKL5O76039 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
CDKL5O76039 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CDKL5O76039 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms