Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTCD1O75127 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTCD1O75127 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
PTCD1O75127 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
PTCD1O75127 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC26.41■■□□□ 1.82
PTCD1O75127 AC005829.2-201ENST00000571422 1056 ntBASIC26.41■■□□□ 1.82
PTCD1O75127 BRWD1-AS2-201ENST00000603064 1028 ntBASIC26.41■■□□□ 1.82
PTCD1O75127 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTCD1O75127 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC26.41■■□□□ 1.82
PTCD1O75127 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTCD1O75127 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD1O75127 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC26.4■■□□□ 1.82
PTCD1O75127 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD1O75127 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD1O75127 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD1O75127 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD1O75127 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC26.4■■□□□ 1.82
PTCD1O75127 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD1O75127 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC26.4■■□□□ 1.82
PTCD1O75127 AC233702.5-201ENST00000584107 538 ntBASIC26.4■■□□□ 1.82
PTCD1O75127 PALM-207ENST00000590161 2137 ntTSL 4 BASIC26.4■■□□□ 1.82
PTCD1O75127 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD1O75127 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC26.4■■□□□ 1.82
PTCD1O75127 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC26.4■■□□□ 1.82
PTCD1O75127 EXOC3-AS1-202ENST00000623673 1663 ntBASIC26.4■■□□□ 1.82
PTCD1O75127 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD1O75127 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
PTCD1O75127 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PTCD1O75127 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
PTCD1O75127 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC26.39■■□□□ 1.82
PTCD1O75127 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
PTCD1O75127 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
PTCD1O75127 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PTCD1O75127 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PTCD1O75127 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC26.39■■□□□ 1.82
PTCD1O75127 AC012618.2-201ENST00000428058 849 ntBASIC26.39■■□□□ 1.82
PTCD1O75127 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC26.39■■□□□ 1.82
PTCD1O75127 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
PTCD1O75127 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC26.39■■□□□ 1.82
PTCD1O75127 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC26.39■■□□□ 1.82
PTCD1O75127 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.82
PTCD1O75127 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC26.39■■□□□ 1.82
PTCD1O75127 AL356652.1-201ENST00000615962 565 ntBASIC26.39■■□□□ 1.82
PTCD1O75127 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
PTCD1O75127 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.81
PTCD1O75127 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
PTCD1O75127 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC26.39■■□□□ 1.81
PTCD1O75127 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
PTCD1O75127 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
PTCD1O75127 GOLGA2P6-201ENST00000340929 2049 ntBASIC26.38■■□□□ 1.81
PTCD1O75127 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
PTCD1O75127 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
PTCD1O75127 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC26.38■■□□□ 1.81
PTCD1O75127 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
PTCD1O75127 AC239809.2-201ENST00000415381 517 ntBASIC26.38■■□□□ 1.81
PTCD1O75127 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
PTCD1O75127 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC26.38■■□□□ 1.81
PTCD1O75127 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PTCD1O75127 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC26.38■■□□□ 1.81
PTCD1O75127 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
PTCD1O75127 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
PTCD1O75127 ABHD17AP6-201ENST00000458502 1044 ntBASIC26.37■■□□□ 1.81
PTCD1O75127 AC133681.1-201ENST00000465482 601 ntBASIC26.37■■□□□ 1.81
PTCD1O75127 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC26.37■■□□□ 1.81
PTCD1O75127 MOK-233ENST00000524214 1539 ntTSL 2 BASIC26.37■■□□□ 1.81
PTCD1O75127 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD1O75127 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC26.37■■□□□ 1.81
PTCD1O75127 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PTCD1O75127 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PTCD1O75127 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PTCD1O75127 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC26.36■■□□□ 1.81
PTCD1O75127 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC26.36■■□□□ 1.81
PTCD1O75127 KRASP1-201ENST00000407852 552 ntBASIC26.36■■□□□ 1.81
PTCD1O75127 PGM5P4-201ENST00000421970 445 ntBASIC26.36■■□□□ 1.81
PTCD1O75127 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PTCD1O75127 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC26.36■■□□□ 1.81
PTCD1O75127 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC26.36■■□□□ 1.81
PTCD1O75127 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
PTCD1O75127 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
PTCD1O75127 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
PTCD1O75127 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PTCD1O75127 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PTCD1O75127 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PTCD1O75127 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PTCD1O75127 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTCD1O75127 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PTCD1O75127 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTCD1O75127 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PTCD1O75127 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms