Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH4O15457 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH4O15457 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH4O15457 CLDN5-201ENST00000403084 2357 ntBASIC23.06■■□□□ 1.28
MSH4O15457 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH4O15457 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC23.06■■□□□ 1.28
MSH4O15457 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC23.05■■□□□ 1.28
MSH4O15457 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH4O15457 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH4O15457 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
MSH4O15457 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
MSH4O15457 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
MSH4O15457 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.05■■□□□ 1.28
MSH4O15457 SERPINH1P1-201ENST00000419794 1249 ntBASIC23.05■■□□□ 1.28
MSH4O15457 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.05■■□□□ 1.28
MSH4O15457 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.05■■□□□ 1.28
MSH4O15457 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC23.05■■□□□ 1.28
MSH4O15457 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC23.05■■□□□ 1.28
MSH4O15457 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
MSH4O15457 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
MSH4O15457 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
MSH4O15457 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC23.05■■□□□ 1.28
MSH4O15457 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH4O15457 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH4O15457 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH4O15457 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH4O15457 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH4O15457 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH4O15457 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH4O15457 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH4O15457 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH4O15457 PGM5P4-201ENST00000421970 445 ntBASIC23.04■■□□□ 1.28
MSH4O15457 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH4O15457 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
MSH4O15457 AC097658.1-201ENST00000475555 843 ntBASIC23.04■■□□□ 1.28
MSH4O15457 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH4O15457 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH4O15457 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH4O15457 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH4O15457 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH4O15457 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC23.04■■□□□ 1.28
MSH4O15457 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.04■■□□□ 1.28
MSH4O15457 AL121603.2-201ENST00000557373 2117 ntBASIC23.03■■□□□ 1.28
MSH4O15457 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH4O15457 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
MSH4O15457 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
MSH4O15457 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
MSH4O15457 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH4O15457 KRT8P36-201ENST00000489121 1440 ntBASIC23.03■■□□□ 1.28
MSH4O15457 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH4O15457 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH4O15457 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23.03■■□□□ 1.28
MSH4O15457 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.03■■□□□ 1.28
MSH4O15457 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
MSH4O15457 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH4O15457 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH4O15457 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH4O15457 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
MSH4O15457 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH4O15457 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH4O15457 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH4O15457 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH4O15457 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH4O15457 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC23.02■■□□□ 1.28
MSH4O15457 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH4O15457 NME6-213ENST00000451657 871 ntTSL 2 BASIC23.02■■□□□ 1.28
MSH4O15457 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.02■■□□□ 1.28
MSH4O15457 KRT18P6-201ENST00000555540 1265 ntBASIC23.02■■□□□ 1.28
MSH4O15457 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC23.02■■□□□ 1.28
MSH4O15457 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
MSH4O15457 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.02■■□□□ 1.28
MSH4O15457 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
MSH4O15457 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH4O15457 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC23.02■■□□□ 1.28
MSH4O15457 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
MSH4O15457 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
MSH4O15457 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC23.01■■□□□ 1.27
MSH4O15457 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH4O15457 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH4O15457 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
MSH4O15457 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH4O15457 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH4O15457 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC23.01■■□□□ 1.27
MSH4O15457 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.01■■□□□ 1.27
MSH4O15457 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC23.01■■□□□ 1.27
MSH4O15457 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
MSH4O15457 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH4O15457 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
MSH4O15457 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH4O15457 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH4O15457 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH4O15457 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.01■■□□□ 1.27
MSH4O15457 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH4O15457 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
MSH4O15457 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC23■■□□□ 1.27
MSH4O15457 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH4O15457 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH4O15457 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH4O15457 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH4O15457 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms