Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SMIM28A0A1B0GU29 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SMIM28A0A1B0GU29 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
SMIM28A0A1B0GU29 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
SMIM28A0A1B0GU29 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SMIM28A0A1B0GU29 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 ITM2C-210ENST00000620962 501 ntBASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMIM28A0A1B0GU29 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SMIM28A0A1B0GU29 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 PNMA6B-201ENST00000538162 1200 ntBASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 AC092368.3-202ENST00000574180 1591 ntBASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SMIM28A0A1B0GU29 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
SMIM28A0A1B0GU29 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 CRK-204ENST00000574295 1391 ntTSL 5 BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 KRT18P29-201ENST00000397031 1267 ntBASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 AC026366.1-201ENST00000488803 879 ntBASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
SMIM28A0A1B0GU29 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 AP003097.1-201ENST00000530657 1135 ntBASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 AC008403.3-201ENST00000598924 454 ntBASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 MIR2861-201ENST00000636310 90 ntBASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SMIM28A0A1B0GU29 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 PLK5-205ENST00000642079 1969 ntBASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMIM28A0A1B0GU29 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SMIM28A0A1B0GU29 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
SMIM28A0A1B0GU29 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SMIM28A0A1B0GU29 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.98■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms