Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 KRT16P2-201ENST00000414673 1423 ntBASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 AC133552.2-202ENST00000575694 574 ntBASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 AC133041.1-202ENST00000642053 222 ntBASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHB3Q9Y5E6 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 AC003102.1-202ENST00000563394 1796 ntBASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
PCDHB3Q9Y5E6 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 TSPY20P-201ENST00000450910 630 ntBASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 AC105036.2-201ENST00000569468 176 ntBASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.02■□□□□ 0.8
PCDHB3Q9Y5E6 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.02■□□□□ 0.79
PCDHB3Q9Y5E6 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PCDHB3Q9Y5E6 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PCDHB3Q9Y5E6 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
PCDHB3Q9Y5E6 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 GUSBP6-202ENST00000438529 1198 ntBASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 AL138781.1-201ENST00000566567 1274 ntBASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 AC068338.2-201ENST00000563278 1430 ntBASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHB3Q9Y5E6 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms