Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 AC104187.1-201ENST00000607510 612 ntBASIC16.58■□□□□ 0.24
FOXA2Q9Y261 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 AC061975.6-201ENST00000579045 1553 ntBASIC16.58■□□□□ 0.24
FOXA2Q9Y261 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 FP700111.2-201ENST00000619190 1892 ntBASIC16.58■□□□□ 0.24
FOXA2Q9Y261 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.58■□□□□ 0.24
FOXA2Q9Y261 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 KRT18P5-201ENST00000436075 1291 ntBASIC16.57■□□□□ 0.24
FOXA2Q9Y261 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 AC138907.5-202ENST00000569484 235 ntBASIC16.57■□□□□ 0.24
FOXA2Q9Y261 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA2Q9Y261 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 GXYLT1P2-201ENST00000433312 1230 ntBASIC16.56■□□□□ 0.24
FOXA2Q9Y261 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA2Q9Y261 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 POU5F1P4-201ENST00000413175 1085 ntBASIC16.55■□□□□ 0.24
FOXA2Q9Y261 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 AC010141.2-201ENST00000452426 721 ntBASIC16.55■□□□□ 0.24
FOXA2Q9Y261 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 AC008175.2-201ENST00000612840 297 ntBASIC16.55■□□□□ 0.24
FOXA2Q9Y261 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA2Q9Y261 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms