Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MTDHP1-201ENST00000605323 784 ntBASIC39.22■■■■□ 3.87
SHROOM4Q9ULL8 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC39.22■■■■□ 3.87
SHROOM4Q9ULL8 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC39.22■■■■□ 3.87
SHROOM4Q9ULL8 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC39.21■■■■□ 3.87
SHROOM4Q9ULL8 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC39.2■■■■□ 3.87
SHROOM4Q9ULL8 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC39.2■■■■□ 3.87
SHROOM4Q9ULL8 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC39.2■■■■□ 3.87
SHROOM4Q9ULL8 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC39.2■■■■□ 3.87
SHROOM4Q9ULL8 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC39.2■■■■□ 3.87
SHROOM4Q9ULL8 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC39.2■■■■□ 3.87
SHROOM4Q9ULL8 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC39.19■■■■□ 3.86
SHROOM4Q9ULL8 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC39.19■■■■□ 3.86
SHROOM4Q9ULL8 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC39.19■■■■□ 3.86
SHROOM4Q9ULL8 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC39.19■■■■□ 3.86
SHROOM4Q9ULL8 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC39.19■■■■□ 3.86
SHROOM4Q9ULL8 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC39.19■■■■□ 3.86
SHROOM4Q9ULL8 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC39.19■■■■□ 3.86
SHROOM4Q9ULL8 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC39.19■■■■□ 3.86
SHROOM4Q9ULL8 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC39.18■■■■□ 3.86
SHROOM4Q9ULL8 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC39.18■■■■□ 3.86
SHROOM4Q9ULL8 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC39.18■■■■□ 3.86
SHROOM4Q9ULL8 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC39.18■■■■□ 3.86
SHROOM4Q9ULL8 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC39.18■■■■□ 3.86
SHROOM4Q9ULL8 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC39.18■■■■□ 3.86
SHROOM4Q9ULL8 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC39.18■■■■□ 3.86
SHROOM4Q9ULL8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC39.18■■■■□ 3.86
SHROOM4Q9ULL8 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC39.18■■■■□ 3.86
SHROOM4Q9ULL8 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC39.18■■■■□ 3.86
SHROOM4Q9ULL8 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC39.18■■■■□ 3.86
SHROOM4Q9ULL8 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 CRK-204ENST00000574295 1391 ntTSL 5 BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 VMO1-204ENST00000441199 741 ntTSL 2 BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 C2orf69P4-201ENST00000565394 541 ntBASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC39.17■■■■□ 3.86
SHROOM4Q9ULL8 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC39.16■■■■□ 3.86
SHROOM4Q9ULL8 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC39.16■■■■□ 3.86
SHROOM4Q9ULL8 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC39.16■■■■□ 3.86
SHROOM4Q9ULL8 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC39.16■■■■□ 3.86
SHROOM4Q9ULL8 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC39.16■■■■□ 3.86
SHROOM4Q9ULL8 RARRES2P10-201ENST00000564312 460 ntBASIC39.16■■■■□ 3.86
SHROOM4Q9ULL8 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC39.16■■■■□ 3.86
SHROOM4Q9ULL8 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC39.16■■■■□ 3.86
SHROOM4Q9ULL8 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC39.15■■■■□ 3.86
SHROOM4Q9ULL8 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC39.15■■■■□ 3.86
SHROOM4Q9ULL8 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC39.15■■■■□ 3.86
SHROOM4Q9ULL8 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC39.15■■■■□ 3.86
SHROOM4Q9ULL8 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC39.15■■■■□ 3.86
SHROOM4Q9ULL8 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC39.15■■■■□ 3.86
SHROOM4Q9ULL8 PTPA-214ENST00000423100 988 ntTSL 2 BASIC39.15■■■■□ 3.86
SHROOM4Q9ULL8 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC39.15■■■■□ 3.86
SHROOM4Q9ULL8 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC39.15■■■■□ 3.86
SHROOM4Q9ULL8 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC39.15■■■■□ 3.86
SHROOM4Q9ULL8 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC39.14■■■■□ 3.86
SHROOM4Q9ULL8 TSPY15P-201ENST00000457163 923 ntBASIC39.14■■■■□ 3.86
SHROOM4Q9ULL8 LY6E-205ENST00000519611 635 ntTSL 3 BASIC39.14■■■■□ 3.86
SHROOM4Q9ULL8 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC39.14■■■■□ 3.86
SHROOM4Q9ULL8 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC39.14■■■■□ 3.86
SHROOM4Q9ULL8 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC39.14■■■■□ 3.86
SHROOM4Q9ULL8 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC39.14■■■■□ 3.86
SHROOM4Q9ULL8 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC39.14■■■■□ 3.86
SHROOM4Q9ULL8 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC39.13■■■■□ 3.86
SHROOM4Q9ULL8 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 AL353708.3-201ENST00000610272 989 ntBASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC39.13■■■■□ 3.85
SHROOM4Q9ULL8 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC39.12■■■■□ 3.85
SHROOM4Q9ULL8 LSR-203ENST00000360798 1963 ntTSL 2 BASIC39.12■■■■□ 3.85
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms