Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 KRT17P3-201ENST00000420566 1262 ntBASIC24.37■■□□□ 1.49
DDX4Q9NQI0 SERP1-205ENST00000487153 657 ntTSL 4 BASIC24.37■■□□□ 1.49
DDX4Q9NQI0 RNF121-214ENST00000533380 870 ntTSL 3 BASIC24.37■■□□□ 1.49
DDX4Q9NQI0 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC24.37■■□□□ 1.49
DDX4Q9NQI0 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC24.37■■□□□ 1.49
DDX4Q9NQI0 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC24.37■■□□□ 1.49
DDX4Q9NQI0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
DDX4Q9NQI0 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
DDX4Q9NQI0 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
DDX4Q9NQI0 AC244015.2-201ENST00000616358 1861 ntBASIC24.36■■□□□ 1.49
DDX4Q9NQI0 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
DDX4Q9NQI0 MME-217ENST00000616757 1315 ntTSL 5 BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 AC008550.1-201ENST00000511500 884 ntBASIC24.35■■□□□ 1.49
DDX4Q9NQI0 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 AL356652.1-201ENST00000615962 565 ntBASIC24.35■■□□□ 1.49
DDX4Q9NQI0 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC24.35■■□□□ 1.49
DDX4Q9NQI0 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 POM121L13P-201ENST00000422362 380 ntBASIC24.34■■□□□ 1.49
DDX4Q9NQI0 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC24.34■■□□□ 1.49
DDX4Q9NQI0 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 FBXW4P1-201ENST00000426721 2239 ntBASIC24.33■■□□□ 1.49
DDX4Q9NQI0 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 UBE2SP1-201ENST00000450587 669 ntBASIC24.33■■□□□ 1.49
DDX4Q9NQI0 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC24.33■■□□□ 1.49
DDX4Q9NQI0 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
DDX4Q9NQI0 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.48
DDX4Q9NQI0 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
DDX4Q9NQI0 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC24.33■■□□□ 1.48
DDX4Q9NQI0 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 Z98882.1-201ENST00000622160 2253 ntBASIC24.32■■□□□ 1.48
DDX4Q9NQI0 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC24.32■■□□□ 1.48
DDX4Q9NQI0 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms