Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
LIME1Q9H400 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
LIME1Q9H400 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIME1Q9H400 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
LIME1Q9H400 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIME1Q9H400 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
LIME1Q9H400 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
LIME1Q9H400 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.01■□□□□ 0.47
LIME1Q9H400 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
LIME1Q9H400 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIME1Q9H400 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIME1Q9H400 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIME1Q9H400 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIME1Q9H400 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
LIME1Q9H400 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LIME1Q9H400 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.01■□□□□ 0.47
LIME1Q9H400 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.01■□□□□ 0.47
LIME1Q9H400 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.01■□□□□ 0.47
LIME1Q9H400 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIME1Q9H400 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.01■□□□□ 0.47
LIME1Q9H400 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
LIME1Q9H400 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
LIME1Q9H400 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LIME1Q9H400 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
LIME1Q9H400 FEM1AP4-201ENST00000443167 1987 ntBASIC18■□□□□ 0.47
LIME1Q9H400 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18■□□□□ 0.47
LIME1Q9H400 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18■□□□□ 0.47
LIME1Q9H400 AC026471.6-201ENST00000622954 1905 ntBASIC18■□□□□ 0.47
LIME1Q9H400 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18■□□□□ 0.47
LIME1Q9H400 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LIME1Q9H400 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18■□□□□ 0.47
LIME1Q9H400 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18■□□□□ 0.47
LIME1Q9H400 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18■□□□□ 0.47
LIME1Q9H400 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18■□□□□ 0.47
LIME1Q9H400 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LIME1Q9H400 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
LIME1Q9H400 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18■□□□□ 0.47
LIME1Q9H400 LSM12P1-201ENST00000411836 588 ntBASIC18■□□□□ 0.47
LIME1Q9H400 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18■□□□□ 0.47
LIME1Q9H400 AL355472.2-201ENST00000422958 438 ntBASIC18■□□□□ 0.47
LIME1Q9H400 ECEL1P3-201ENST00000427961 737 ntBASIC18■□□□□ 0.47
LIME1Q9H400 UBE2SP1-201ENST00000450587 669 ntBASIC18■□□□□ 0.47
LIME1Q9H400 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18■□□□□ 0.47
LIME1Q9H400 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18■□□□□ 0.47
LIME1Q9H400 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18■□□□□ 0.47
LIME1Q9H400 AC008403.3-201ENST00000598924 454 ntBASIC18■□□□□ 0.47
LIME1Q9H400 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18■□□□□ 0.47
LIME1Q9H400 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LIME1Q9H400 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LIME1Q9H400 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
LIME1Q9H400 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LIME1Q9H400 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
LIME1Q9H400 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.99■□□□□ 0.47
LIME1Q9H400 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
LIME1Q9H400 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.99■□□□□ 0.47
LIME1Q9H400 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.99■□□□□ 0.47
LIME1Q9H400 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.99■□□□□ 0.47
LIME1Q9H400 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.99■□□□□ 0.47
LIME1Q9H400 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.99■□□□□ 0.47
LIME1Q9H400 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.99■□□□□ 0.47
LIME1Q9H400 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
LIME1Q9H400 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.99■□□□□ 0.47
LIME1Q9H400 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIME1Q9H400 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.99■□□□□ 0.47
LIME1Q9H400 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 KRT17P1-201ENST00000399211 1546 ntBASIC17.98■□□□□ 0.47
LIME1Q9H400 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.98■□□□□ 0.47
LIME1Q9H400 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.98■□□□□ 0.47
LIME1Q9H400 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.98■□□□□ 0.47
LIME1Q9H400 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 AL162412.1-201ENST00000567129 965 ntBASIC17.98■□□□□ 0.47
LIME1Q9H400 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.98■□□□□ 0.47
LIME1Q9H400 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.98■□□□□ 0.47
LIME1Q9H400 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
LIME1Q9H400 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIME1Q9H400 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC17.98■□□□□ 0.47
LIME1Q9H400 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms