Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC21.14■□□□□ 0.97
COL25A1Q9BXS0 FAM87A-204ENST00000613235 858 ntBASIC21.14■□□□□ 0.97
COL25A1Q9BXS0 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL25A1Q9BXS0 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.14■□□□□ 0.97
COL25A1Q9BXS0 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL25A1Q9BXS0 CYP21A1P-202ENST00000354927 1481 ntBASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 HMGN1P19-201ENST00000436976 333 ntBASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 NBPF21P-201ENST00000425093 1451 ntBASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.13■□□□□ 0.97
COL25A1Q9BXS0 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL25A1Q9BXS0 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL25A1Q9BXS0 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
COL25A1Q9BXS0 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL25A1Q9BXS0 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.12■□□□□ 0.97
COL25A1Q9BXS0 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.12■□□□□ 0.97
COL25A1Q9BXS0 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL25A1Q9BXS0 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC21.12■□□□□ 0.97
COL25A1Q9BXS0 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL25A1Q9BXS0 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL25A1Q9BXS0 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL25A1Q9BXS0 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.11■□□□□ 0.97
COL25A1Q9BXS0 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.11■□□□□ 0.97
COL25A1Q9BXS0 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL25A1Q9BXS0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL25A1Q9BXS0 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
COL25A1Q9BXS0 AL390719.1-204ENST00000412397 1219 ntBASIC21.11■□□□□ 0.97
COL25A1Q9BXS0 FAAHP1-202ENST00000446499 1238 ntBASIC21.11■□□□□ 0.97
COL25A1Q9BXS0 AL671277.2-201ENST00000458060 996 ntBASIC21.11■□□□□ 0.97
COL25A1Q9BXS0 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC21.11■□□□□ 0.97
COL25A1Q9BXS0 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
COL25A1Q9BXS0 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
COL25A1Q9BXS0 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 KRT18P13-201ENST00000400056 1290 ntBASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 AC009078.2-202ENST00000463353 338 ntBASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 CR392000.1-201ENST00000624770 1228 ntBASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL25A1Q9BXS0 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 INGX-201ENST00000359239 846 ntBASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 AC111152.3-201ENST00000569699 673 ntBASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 AC008622.2-201ENST00000617006 1229 ntBASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 HOTTIP_1.1-201ENST00000620415 57 ntBASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.09■□□□□ 0.97
COL25A1Q9BXS0 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.08■□□□□ 0.97
COL25A1Q9BXS0 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms