Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDCA3Q99618 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDCA3Q99618 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDCA3Q99618 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDCA3Q99618 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
CDCA3Q99618 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDCA3Q99618 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDCA3Q99618 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDCA3Q99618 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDCA3Q99618 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.54■■□□□ 1.04
CDCA3Q99618 CD177P1-201ENST00000606252 935 ntBASIC21.54■■□□□ 1.04
CDCA3Q99618 AC026471.5-201ENST00000615068 467 ntBASIC21.54■■□□□ 1.04
CDCA3Q99618 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CDCA3Q99618 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDCA3Q99618 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.54■■□□□ 1.04
CDCA3Q99618 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDCA3Q99618 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CDCA3Q99618 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
CDCA3Q99618 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDCA3Q99618 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CDCA3Q99618 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDCA3Q99618 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDCA3Q99618 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDCA3Q99618 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDCA3Q99618 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDCA3Q99618 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.53■■□□□ 1.04
CDCA3Q99618 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDCA3Q99618 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDCA3Q99618 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.53■■□□□ 1.04
CDCA3Q99618 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.53■■□□□ 1.04
CDCA3Q99618 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.53■■□□□ 1.04
CDCA3Q99618 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.53■■□□□ 1.04
CDCA3Q99618 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.53■■□□□ 1.04
CDCA3Q99618 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDCA3Q99618 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDCA3Q99618 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDCA3Q99618 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.53■■□□□ 1.04
CDCA3Q99618 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.53■■□□□ 1.04
CDCA3Q99618 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDCA3Q99618 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.53■■□□□ 1.04
CDCA3Q99618 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CDCA3Q99618 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CDCA3Q99618 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CDCA3Q99618 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDCA3Q99618 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.52■■□□□ 1.04
CDCA3Q99618 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CDCA3Q99618 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CDCA3Q99618 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.52■■□□□ 1.04
CDCA3Q99618 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.52■■□□□ 1.04
CDCA3Q99618 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.52■■□□□ 1.04
CDCA3Q99618 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.52■■□□□ 1.04
CDCA3Q99618 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.52■■□□□ 1.04
CDCA3Q99618 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
CDCA3Q99618 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.52■■□□□ 1.04
CDCA3Q99618 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CDCA3Q99618 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CDCA3Q99618 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDCA3Q99618 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
CDCA3Q99618 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.51■■□□□ 1.03
CDCA3Q99618 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.51■■□□□ 1.03
CDCA3Q99618 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDCA3Q99618 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDCA3Q99618 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDCA3Q99618 AL353807.1-201ENST00000427475 662 ntBASIC21.51■■□□□ 1.03
CDCA3Q99618 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.51■■□□□ 1.03
CDCA3Q99618 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDCA3Q99618 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.51■■□□□ 1.03
CDCA3Q99618 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.51■■□□□ 1.03
CDCA3Q99618 AL353708.3-201ENST00000610272 989 ntBASIC21.51■■□□□ 1.03
CDCA3Q99618 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDCA3Q99618 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDCA3Q99618 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CDCA3Q99618 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDCA3Q99618 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
CDCA3Q99618 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDCA3Q99618 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDCA3Q99618 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.5■■□□□ 1.03
CDCA3Q99618 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDCA3Q99618 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDCA3Q99618 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDCA3Q99618 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CDCA3Q99618 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.5■■□□□ 1.03
CDCA3Q99618 AL355355.2-201ENST00000442321 338 ntBASIC21.5■■□□□ 1.03
CDCA3Q99618 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
CDCA3Q99618 AP003071.4-201ENST00000562276 1284 ntBASIC21.5■■□□□ 1.03
CDCA3Q99618 AL121829.2-201ENST00000620908 328 ntBASIC21.5■■□□□ 1.03
CDCA3Q99618 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.5■■□□□ 1.03
CDCA3Q99618 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDCA3Q99618 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDCA3Q99618 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDCA3Q99618 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDCA3Q99618 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDCA3Q99618 MMP23A-201ENST00000234610 1017 ntBASIC21.49■■□□□ 1.03
CDCA3Q99618 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDCA3Q99618 TMPOP1-202ENST00000424642 1267 ntBASIC21.49■■□□□ 1.03
CDCA3Q99618 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.49■■□□□ 1.03
CDCA3Q99618 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDCA3Q99618 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
CDCA3Q99618 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CDCA3Q99618 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms