Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.32■■□□□ 1
CCHCR1Q8TD31 AC011484.1-201ENST00000377652 1995 ntBASIC21.32■■□□□ 1
CCHCR1Q8TD31 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCHCR1Q8TD31 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.32■■□□□ 1
CCHCR1Q8TD31 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCHCR1Q8TD31 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.31■■□□□ 1
CCHCR1Q8TD31 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.31■■□□□ 1
CCHCR1Q8TD31 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CCHCR1Q8TD31 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.31■■□□□ 1
CCHCR1Q8TD31 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.31■■□□□ 1
CCHCR1Q8TD31 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.31■■□□□ 1
CCHCR1Q8TD31 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCHCR1Q8TD31 DUX4L2-201ENST00000561772 1275 ntBASIC21.31■■□□□ 1
CCHCR1Q8TD31 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.31■■□□□ 1
CCHCR1Q8TD31 DUX4L6-201ENST00000626483 1275 ntBASIC21.31■■□□□ 1
CCHCR1Q8TD31 DUX4L1-201ENST00000627662 1275 ntBASIC21.31■■□□□ 1
CCHCR1Q8TD31 DUX4L8-201ENST00000629013 1275 ntBASIC21.31■■□□□ 1
CCHCR1Q8TD31 DUX4L3-201ENST00000630187 1275 ntBASIC21.31■■□□□ 1
CCHCR1Q8TD31 DUX4L7-201ENST00000630678 1275 ntBASIC21.31■■□□□ 1
CCHCR1Q8TD31 DUX4L5-201ENST00000630834 1275 ntBASIC21.31■■□□□ 1
CCHCR1Q8TD31 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CCHCR1Q8TD31 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCHCR1Q8TD31 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.31■■□□□ 1
CCHCR1Q8TD31 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.31■■□□□ 1
CCHCR1Q8TD31 AP004607.4-201ENST00000530158 1459 ntBASIC21.31■■□□□ 1
CCHCR1Q8TD31 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.31■■□□□ 1
CCHCR1Q8TD31 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCHCR1Q8TD31 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.31■■□□□ 1
CCHCR1Q8TD31 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.3■■□□□ 1
CCHCR1Q8TD31 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.3■■□□□ 1
CCHCR1Q8TD31 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.3■■□□□ 1
CCHCR1Q8TD31 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 EEF1DP3-203ENST00000566025 782 ntBASIC21.3■■□□□ 1
CCHCR1Q8TD31 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.3■■□□□ 1
CCHCR1Q8TD31 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.3■■□□□ 1
CCHCR1Q8TD31 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.3■■□□□ 1
CCHCR1Q8TD31 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.3■■□□□ 1
CCHCR1Q8TD31 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.3■■□□□ 1
CCHCR1Q8TD31 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CCHCR1Q8TD31 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.3■■□□□ 1
CCHCR1Q8TD31 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.29■■□□□ 1
CCHCR1Q8TD31 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCHCR1Q8TD31 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCHCR1Q8TD31 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
CCHCR1Q8TD31 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCHCR1Q8TD31 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCHCR1Q8TD31 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCHCR1Q8TD31 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
CCHCR1Q8TD31 KRT87P-202ENST00000534226 1464 ntBASIC21.29■■□□□ 1
CCHCR1Q8TD31 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.29■■□□□ 1
CCHCR1Q8TD31 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.29■■□□□ 1
CCHCR1Q8TD31 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCHCR1Q8TD31 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.29■■□□□ 1
CCHCR1Q8TD31 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.29■■□□□ 1
CCHCR1Q8TD31 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCHCR1Q8TD31 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCHCR1Q8TD31 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
CCHCR1Q8TD31 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CCHCR1Q8TD31 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CCHCR1Q8TD31 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.29■■□□□ 1
CCHCR1Q8TD31 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CCHCR1Q8TD31 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCHCR1Q8TD31 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CCHCR1Q8TD31 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCHCR1Q8TD31 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCHCR1Q8TD31 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCHCR1Q8TD31 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.28■■□□□ 1
CCHCR1Q8TD31 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCHCR1Q8TD31 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCHCR1Q8TD31 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCHCR1Q8TD31 FP700111.2-201ENST00000619190 1892 ntBASIC21.27■■□□□ 1
CCHCR1Q8TD31 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCHCR1Q8TD31 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCHCR1Q8TD31 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.27■■□□□ 1
CCHCR1Q8TD31 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.27■■□□□ 1
CCHCR1Q8TD31 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCHCR1Q8TD31 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.27■■□□□ 1
CCHCR1Q8TD31 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms