Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 AC139713.2-201ENST00000641328 2723 ntBASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC16.38■□□□□ 0.21
CLRN3Q8NCR9 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 AC099398.1-201ENST00000567919 2776 ntBASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 AL138781.2-201ENST00000617896 1843 ntBASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
CLRN3Q8NCR9 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 PRORSD1P-202ENST00000563365 2154 ntBASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 AL157400.5-201ENST00000507624 621 ntBASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN3Q8NCR9 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN3Q8NCR9 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms