Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
CLIP4Q8N3C7 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 AL020996.1-203ENST00000536896 2307 ntBASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP4Q8N3C7 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 LINC02228-203ENST00000641970 1355 ntBASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 PCDHAC2-203ENST00000615316 3011 ntBASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP4Q8N3C7 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.12■□□□□ 0.65
CLIP4Q8N3C7 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 AC138907.5-202ENST00000569484 235 ntBASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 AC008175.2-201ENST00000612840 297 ntBASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP4Q8N3C7 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP4Q8N3C7 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP4Q8N3C7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP4Q8N3C7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
CLIP4Q8N3C7 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP4Q8N3C7 POU5F1P4-201ENST00000413175 1085 ntBASIC19.1■□□□□ 0.65
CLIP4Q8N3C7 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.1■□□□□ 0.65
CLIP4Q8N3C7 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.1■□□□□ 0.65
CLIP4Q8N3C7 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.1■□□□□ 0.65
CLIP4Q8N3C7 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP4Q8N3C7 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP4Q8N3C7 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP4Q8N3C7 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CLIP4Q8N3C7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP4Q8N3C7 AC073314.1-201ENST00000568729 2216 ntBASIC19.09■□□□□ 0.65
CLIP4Q8N3C7 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP4Q8N3C7 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
CLIP4Q8N3C7 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP4Q8N3C7 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP4Q8N3C7 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.09■□□□□ 0.65
CLIP4Q8N3C7 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms