Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 FEM1AP1-201ENST00000431297 1995 ntBASIC21.23■□□□□ 0.99
PRPF39Q86UA1 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.23■□□□□ 0.99
PRPF39Q86UA1 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.22■□□□□ 0.99
PRPF39Q86UA1 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 POU5F1P4-201ENST00000413175 1085 ntBASIC21.21■□□□□ 0.99
PRPF39Q86UA1 AC008175.2-201ENST00000612840 297 ntBASIC21.21■□□□□ 0.99
PRPF39Q86UA1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF39Q86UA1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
PRPF39Q86UA1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
PRPF39Q86UA1 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 AC083906.2-201ENST00000511578 360 ntBASIC21.2■□□□□ 0.98
PRPF39Q86UA1 SLC7A5P2-201ENST00000553010 536 ntBASIC21.2■□□□□ 0.98
PRPF39Q86UA1 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.2■□□□□ 0.98
PRPF39Q86UA1 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 AC010536.3-201ENST00000620306 533 ntBASIC21.19■□□□□ 0.98
PRPF39Q86UA1 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 AC092667.1-201ENST00000434301 2586 ntBASIC21.19■□□□□ 0.98
PRPF39Q86UA1 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF39Q86UA1 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 SLC7A5P1-201ENST00000568957 537 ntBASIC21.18■□□□□ 0.98
PRPF39Q86UA1 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 AL050303.2-201ENST00000619798 666 ntBASIC21.18■□□□□ 0.98
PRPF39Q86UA1 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.18■□□□□ 0.98
PRPF39Q86UA1 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 PLK5-205ENST00000642079 1969 ntBASIC21.17■□□□□ 0.98
PRPF39Q86UA1 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF39Q86UA1 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF39Q86UA1 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms