Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.62■□□□□ 0.57
ATG4DQ86TL0 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 TERF1P5-201ENST00000477545 1207 ntBASIC18.62■□□□□ 0.57
ATG4DQ86TL0 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 AC020907.5-201ENST00000624372 1936 ntBASIC18.62■□□□□ 0.57
ATG4DQ86TL0 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 AL121603.2-201ENST00000557373 2117 ntBASIC18.62■□□□□ 0.57
ATG4DQ86TL0 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ATG4DQ86TL0 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.61■□□□□ 0.57
ATG4DQ86TL0 CDCA4P2-201ENST00000441182 718 ntBASIC18.61■□□□□ 0.57
ATG4DQ86TL0 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 AC011767.1-201ENST00000617410 1153 ntBASIC18.61■□□□□ 0.57
ATG4DQ86TL0 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 MIR2861-201ENST00000636310 90 ntBASIC18.61■□□□□ 0.57
ATG4DQ86TL0 AC073111.5-205ENST00000641717 521 ntBASIC18.61■□□□□ 0.57
ATG4DQ86TL0 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4DQ86TL0 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 RAP2CP1-201ENST00000605103 478 ntBASIC18.6■□□□□ 0.57
ATG4DQ86TL0 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4DQ86TL0 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 CDV3P1-201ENST00000471403 739 ntBASIC18.59■□□□□ 0.57
ATG4DQ86TL0 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4DQ86TL0 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.58■□□□□ 0.57
ATG4DQ86TL0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4DQ86TL0 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4DQ86TL0 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4DQ86TL0 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms