Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 AC073508.3-201ENST00000619697 1419 ntBASIC17.26■□□□□ 0.35
VPS13CQ709C8 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
VPS13CQ709C8 AC116050.2-201ENST00000612102 1779 ntBASIC17.25■□□□□ 0.35
VPS13CQ709C8 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
VPS13CQ709C8 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
VPS13CQ709C8 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS13CQ709C8 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS13CQ709C8 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 PRKY-204ENST00000533551 1019 ntBASIC17.25■□□□□ 0.35
VPS13CQ709C8 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS13CQ709C8 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 AC113347.1-201ENST00000413321 391 ntBASIC17.25■□□□□ 0.35
VPS13CQ709C8 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13CQ709C8 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS13CQ709C8 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
VPS13CQ709C8 AC026471.5-201ENST00000615068 467 ntBASIC17.25■□□□□ 0.35
VPS13CQ709C8 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13CQ709C8 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13CQ709C8 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13CQ709C8 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13CQ709C8 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13CQ709C8 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13CQ709C8 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 MCRIP2P1-201ENST00000394346 511 ntBASIC17.24■□□□□ 0.35
VPS13CQ709C8 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13CQ709C8 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
VPS13CQ709C8 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS13CQ709C8 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13CQ709C8 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13CQ709C8 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13CQ709C8 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13CQ709C8 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
VPS13CQ709C8 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS13CQ709C8 AC120498.8-201ENST00000614275 531 ntBASIC17.23■□□□□ 0.35
VPS13CQ709C8 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VPS13CQ709C8 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS13CQ709C8 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13CQ709C8 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.23■□□□□ 0.35
VPS13CQ709C8 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13CQ709C8 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13CQ709C8 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13CQ709C8 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
VPS13CQ709C8 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13CQ709C8 CYP2D8P-201ENST00000433633 1490 ntBASIC17.23■□□□□ 0.35
VPS13CQ709C8 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13CQ709C8 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS13CQ709C8 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13CQ709C8 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13CQ709C8 AC087633.2-202ENST00000565166 1439 ntBASIC17.22■□□□□ 0.35
VPS13CQ709C8 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS13CQ709C8 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS13CQ709C8 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13CQ709C8 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13CQ709C8 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13CQ709C8 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
VPS13CQ709C8 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13CQ709C8 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13CQ709C8 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
VPS13CQ709C8 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.22■□□□□ 0.35
VPS13CQ709C8 RARRES2P10-201ENST00000564312 460 ntBASIC17.22■□□□□ 0.35
VPS13CQ709C8 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
VPS13CQ709C8 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS13CQ709C8 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13CQ709C8 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13CQ709C8 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13CQ709C8 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.22■□□□□ 0.35
VPS13CQ709C8 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13CQ709C8 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
VPS13CQ709C8 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.21■□□□□ 0.35
VPS13CQ709C8 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.21■□□□□ 0.35
VPS13CQ709C8 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
VPS13CQ709C8 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms