Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 AC233992.3-201ENST00000607491 485 ntBASIC19.04■□□□□ 0.64
RFX4Q33E94 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
RFX4Q33E94 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.04■□□□□ 0.64
RFX4Q33E94 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
RFX4Q33E94 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.04■□□□□ 0.64
RFX4Q33E94 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
RFX4Q33E94 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RFX4Q33E94 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RFX4Q33E94 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX4Q33E94 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX4Q33E94 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX4Q33E94 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.03■□□□□ 0.64
RFX4Q33E94 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX4Q33E94 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX4Q33E94 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX4Q33E94 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX4Q33E94 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
RFX4Q33E94 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RFX4Q33E94 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RFX4Q33E94 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
RFX4Q33E94 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RFX4Q33E94 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RFX4Q33E94 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RFX4Q33E94 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RFX4Q33E94 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RFX4Q33E94 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RFX4Q33E94 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RFX4Q33E94 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RFX4Q33E94 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.02■□□□□ 0.64
RFX4Q33E94 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.02■□□□□ 0.64
RFX4Q33E94 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.02■□□□□ 0.64
RFX4Q33E94 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
RFX4Q33E94 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
RFX4Q33E94 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.02■□□□□ 0.63
RFX4Q33E94 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
RFX4Q33E94 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
RFX4Q33E94 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
RFX4Q33E94 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
RFX4Q33E94 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.01■□□□□ 0.63
RFX4Q33E94 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
RFX4Q33E94 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.01■□□□□ 0.63
RFX4Q33E94 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.01■□□□□ 0.63
RFX4Q33E94 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.01■□□□□ 0.63
RFX4Q33E94 TCF3P1-201ENST00000423021 1937 ntBASIC19.01■□□□□ 0.63
RFX4Q33E94 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
RFX4Q33E94 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX4Q33E94 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 AC126544.1-201ENST00000580842 1059 ntBASIC19■□□□□ 0.63
RFX4Q33E94 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
RFX4Q33E94 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19■□□□□ 0.63
RFX4Q33E94 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19■□□□□ 0.63
RFX4Q33E94 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19■□□□□ 0.63
RFX4Q33E94 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFX4Q33E94 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
RFX4Q33E94 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
RFX4Q33E94 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 AC024257.2-201ENST00000549699 147 ntBASIC18.99■□□□□ 0.63
RFX4Q33E94 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
RFX4Q33E94 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
RFX4Q33E94 AC009237.3-201ENST00000393279 1427 ntBASIC18.99■□□□□ 0.63
RFX4Q33E94 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RFX4Q33E94 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms