Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC16.49■□□□□ 0.23
CX3CL1P78423 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CX3CL1P78423 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CX3CL1P78423 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CX3CL1P78423 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.49■□□□□ 0.23
CX3CL1P78423 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CX3CL1P78423 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CX3CL1P78423 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CX3CL1P78423 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CX3CL1P78423 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CX3CL1P78423 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC16.49■□□□□ 0.23
CX3CL1P78423 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CX3CL1P78423 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CX3CL1P78423 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CX3CL1P78423 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CX3CL1P78423 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CX3CL1P78423 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.48■□□□□ 0.23
CX3CL1P78423 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CX3CL1P78423 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.48■□□□□ 0.23
CX3CL1P78423 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 AC016769.1-201ENST00000409132 1010 ntBASIC16.48■□□□□ 0.23
CX3CL1P78423 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC16.48■□□□□ 0.23
CX3CL1P78423 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC16.48■□□□□ 0.23
CX3CL1P78423 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC16.48■□□□□ 0.23
CX3CL1P78423 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC16.48■□□□□ 0.23
CX3CL1P78423 TFG-210ENST00000620299 1289 ntTSL 5 BASIC16.48■□□□□ 0.23
CX3CL1P78423 MYCNOS-205ENST00000641950 531 ntBASIC16.48■□□□□ 0.23
CX3CL1P78423 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC16.48■□□□□ 0.23
CX3CL1P78423 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CX3CL1P78423 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CX3CL1P78423 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CX3CL1P78423 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CX3CL1P78423 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.47■□□□□ 0.23
CX3CL1P78423 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
CX3CL1P78423 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CX3CL1P78423 HSCB-202ENST00000398941 955 ntTSL 2 BASIC16.47■□□□□ 0.23
CX3CL1P78423 KRT18P11-201ENST00000435214 1283 ntBASIC16.47■□□□□ 0.23
CX3CL1P78423 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CX3CL1P78423 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.47■□□□□ 0.23
CX3CL1P78423 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CX3CL1P78423 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC16.47■□□□□ 0.23
CX3CL1P78423 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC16.47■□□□□ 0.23
CX3CL1P78423 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC16.47■□□□□ 0.23
CX3CL1P78423 RARRES2P11-201ENST00000635158 484 ntBASIC16.47■□□□□ 0.23
CX3CL1P78423 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CX3CL1P78423 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CX3CL1P78423 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC16.47■□□□□ 0.23
CX3CL1P78423 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CX3CL1P78423 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CX3CL1P78423 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CX3CL1P78423 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC16.47■□□□□ 0.23
CX3CL1P78423 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CX3CL1P78423 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CX3CL1P78423 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CX3CL1P78423 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CX3CL1P78423 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
CX3CL1P78423 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CX3CL1P78423 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CX3CL1P78423 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CX3CL1P78423 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CX3CL1P78423 SPI1-203ENST00000533030 661 ntTSL 2 BASIC16.46■□□□□ 0.23
CX3CL1P78423 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC16.46■□□□□ 0.23
CX3CL1P78423 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC16.46■□□□□ 0.23
CX3CL1P78423 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC16.46■□□□□ 0.23
CX3CL1P78423 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CX3CL1P78423 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CX3CL1P78423 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CX3CL1P78423 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CX3CL1P78423 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC16.45■□□□□ 0.22
CX3CL1P78423 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.45■□□□□ 0.22
CX3CL1P78423 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.45■□□□□ 0.22
CX3CL1P78423 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 PARL-206ENST00000435888 1098 ntTSL 5 BASIC16.45■□□□□ 0.22
CX3CL1P78423 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
CX3CL1P78423 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
CX3CL1P78423 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 AC022517.1-201ENST00000592429 346 ntBASIC16.45■□□□□ 0.22
CX3CL1P78423 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.45■□□□□ 0.22
CX3CL1P78423 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CX3CL1P78423 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms