Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PKNOX1P55347 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
PKNOX1P55347 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
PKNOX1P55347 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
PKNOX1P55347 MIR6084-201ENST00000622012 110 ntBASIC20.08■□□□□ 0.81
PKNOX1P55347 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.08■□□□□ 0.81
PKNOX1P55347 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PKNOX1P55347 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
PKNOX1P55347 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
PKNOX1P55347 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PKNOX1P55347 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.08■□□□□ 0.8
PKNOX1P55347 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
PKNOX1P55347 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
PKNOX1P55347 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.08■□□□□ 0.8
PKNOX1P55347 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PKNOX1P55347 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.07■□□□□ 0.8
PKNOX1P55347 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
PKNOX1P55347 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.07■□□□□ 0.8
PKNOX1P55347 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PKNOX1P55347 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
PKNOX1P55347 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.07■□□□□ 0.8
PKNOX1P55347 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PKNOX1P55347 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.07■□□□□ 0.8
PKNOX1P55347 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PKNOX1P55347 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.07■□□□□ 0.8
PKNOX1P55347 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.07■□□□□ 0.8
PKNOX1P55347 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PKNOX1P55347 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PKNOX1P55347 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PKNOX1P55347 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.07■□□□□ 0.8
PKNOX1P55347 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.07■□□□□ 0.8
PKNOX1P55347 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.07■□□□□ 0.8
PKNOX1P55347 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PKNOX1P55347 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PKNOX1P55347 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
PKNOX1P55347 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
PKNOX1P55347 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PKNOX1P55347 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PKNOX1P55347 AC027702.1-201ENST00000563810 1770 ntBASIC20.06■□□□□ 0.8
PKNOX1P55347 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PKNOX1P55347 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PKNOX1P55347 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PKNOX1P55347 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PKNOX1P55347 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PKNOX1P55347 AC138907.5-202ENST00000569484 235 ntBASIC20.06■□□□□ 0.8
PKNOX1P55347 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PKNOX1P55347 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PKNOX1P55347 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.06■□□□□ 0.8
PKNOX1P55347 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PKNOX1P55347 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.05■□□□□ 0.8
PKNOX1P55347 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
PKNOX1P55347 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.05■□□□□ 0.8
PKNOX1P55347 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
PKNOX1P55347 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 IRS3P-201ENST00000223076 1006 ntBASIC20.05■□□□□ 0.8
PKNOX1P55347 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.05■□□□□ 0.8
PKNOX1P55347 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 AC020907.5-201ENST00000624372 1936 ntBASIC20.05■□□□□ 0.8
PKNOX1P55347 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
PKNOX1P55347 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.05■□□□□ 0.8
PKNOX1P55347 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.05■□□□□ 0.8
PKNOX1P55347 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PKNOX1P55347 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PKNOX1P55347 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PKNOX1P55347 KRT16P2-201ENST00000414673 1423 ntBASIC20.04■□□□□ 0.8
PKNOX1P55347 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
PKNOX1P55347 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PKNOX1P55347 AC027612.3-201ENST00000413684 1047 ntBASIC20.04■□□□□ 0.8
PKNOX1P55347 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.04■□□□□ 0.8
PKNOX1P55347 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PKNOX1P55347 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PKNOX1P55347 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PKNOX1P55347 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PKNOX1P55347 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PKNOX1P55347 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PKNOX1P55347 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PKNOX1P55347 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.04■□□□□ 0.8
PKNOX1P55347 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
PKNOX1P55347 FP700111.2-201ENST00000619190 1892 ntBASIC20.03■□□□□ 0.8
PKNOX1P55347 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.03■□□□□ 0.8
PKNOX1P55347 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
PKNOX1P55347 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
PKNOX1P55347 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
PKNOX1P55347 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PKNOX1P55347 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.03■□□□□ 0.8
PKNOX1P55347 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.03■□□□□ 0.8
PKNOX1P55347 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.03■□□□□ 0.8
PKNOX1P55347 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
PKNOX1P55347 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PKNOX1P55347 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.03■□□□□ 0.8
PKNOX1P55347 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms