Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
FOXA1P55317 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
FOXA1P55317 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
FOXA1P55317 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.87■□□□□ 0.77
FOXA1P55317 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.87■□□□□ 0.77
FOXA1P55317 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
FOXA1P55317 AC245052.3-201ENST00000450182 901 ntBASIC19.87■□□□□ 0.77
FOXA1P55317 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.87■□□□□ 0.77
FOXA1P55317 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
FOXA1P55317 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.87■□□□□ 0.77
FOXA1P55317 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
FOXA1P55317 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
FOXA1P55317 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
FOXA1P55317 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
FOXA1P55317 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.87■□□□□ 0.77
FOXA1P55317 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
FOXA1P55317 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA1P55317 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA1P55317 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA1P55317 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA1P55317 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.86■□□□□ 0.77
FOXA1P55317 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.86■□□□□ 0.77
FOXA1P55317 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.86■□□□□ 0.77
FOXA1P55317 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA1P55317 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA1P55317 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.86■□□□□ 0.77
FOXA1P55317 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.86■□□□□ 0.77
FOXA1P55317 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.86■□□□□ 0.77
FOXA1P55317 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.86■□□□□ 0.77
FOXA1P55317 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA1P55317 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA1P55317 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA1P55317 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA1P55317 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.85■□□□□ 0.77
FOXA1P55317 AC092720.2-201ENST00000602388 1665 ntBASIC19.85■□□□□ 0.77
FOXA1P55317 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
FOXA1P55317 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
FOXA1P55317 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
FOXA1P55317 DUX4L2-201ENST00000561772 1275 ntBASIC19.85■□□□□ 0.77
FOXA1P55317 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.85■□□□□ 0.77
FOXA1P55317 DUX4L6-201ENST00000626483 1275 ntBASIC19.85■□□□□ 0.77
FOXA1P55317 DUX4L1-201ENST00000627662 1275 ntBASIC19.85■□□□□ 0.77
FOXA1P55317 DUX4L8-201ENST00000629013 1275 ntBASIC19.85■□□□□ 0.77
FOXA1P55317 DUX4L3-201ENST00000630187 1275 ntBASIC19.85■□□□□ 0.77
FOXA1P55317 DUX4L7-201ENST00000630678 1275 ntBASIC19.85■□□□□ 0.77
FOXA1P55317 DUX4L5-201ENST00000630834 1275 ntBASIC19.85■□□□□ 0.77
FOXA1P55317 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.85■□□□□ 0.77
FOXA1P55317 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
FOXA1P55317 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
FOXA1P55317 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
FOXA1P55317 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
FOXA1P55317 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA1P55317 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA1P55317 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA1P55317 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.84■□□□□ 0.77
FOXA1P55317 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
FOXA1P55317 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.84■□□□□ 0.77
FOXA1P55317 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.84■□□□□ 0.77
FOXA1P55317 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.84■□□□□ 0.77
FOXA1P55317 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA1P55317 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA1P55317 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA1P55317 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.84■□□□□ 0.77
FOXA1P55317 TERF1P2-201ENST00000583350 1212 ntBASIC19.84■□□□□ 0.77
FOXA1P55317 AP001160.3-201ENST00000601484 763 ntBASIC19.84■□□□□ 0.77
FOXA1P55317 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA1P55317 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA1P55317 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
FOXA1P55317 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
FOXA1P55317 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.83■□□□□ 0.77
FOXA1P55317 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
FOXA1P55317 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
FOXA1P55317 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.83■□□□□ 0.77
FOXA1P55317 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
FOXA1P55317 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
FOXA1P55317 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.83■□□□□ 0.77
FOXA1P55317 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.83■□□□□ 0.77
FOXA1P55317 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.83■□□□□ 0.77
FOXA1P55317 AC120498.10-201ENST00000621827 505 ntBASIC19.83■□□□□ 0.77
FOXA1P55317 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
FOXA1P55317 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.83■□□□□ 0.76
FOXA1P55317 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.83■□□□□ 0.76
FOXA1P55317 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
FOXA1P55317 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
FOXA1P55317 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
FOXA1P55317 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
FOXA1P55317 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.83■□□□□ 0.76
FOXA1P55317 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
FOXA1P55317 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.76
FOXA1P55317 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
FOXA1P55317 AC116050.2-201ENST00000612102 1779 ntBASIC19.83■□□□□ 0.76
FOXA1P55317 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA1P55317 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
FOXA1P55317 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
FOXA1P55317 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA1P55317 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA1P55317 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.82■□□□□ 0.76
FOXA1P55317 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
FOXA1P55317 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA1P55317 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms