Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CDH4P55283 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.03■□□□□ 0.96
CDH4P55283 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDH4P55283 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
CDH4P55283 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.03■□□□□ 0.96
CDH4P55283 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.03■□□□□ 0.96
CDH4P55283 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CDH4P55283 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.03■□□□□ 0.96
CDH4P55283 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDH4P55283 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDH4P55283 PLK5-205ENST00000642079 1969 ntBASIC21.03■□□□□ 0.96
CDH4P55283 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDH4P55283 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
CDH4P55283 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDH4P55283 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.02■□□□□ 0.96
CDH4P55283 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.02■□□□□ 0.96
CDH4P55283 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.02■□□□□ 0.96
CDH4P55283 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDH4P55283 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CDH4P55283 AC098934.4-201ENST00000564127 592 ntBASIC21.02■□□□□ 0.96
CDH4P55283 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CDH4P55283 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDH4P55283 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDH4P55283 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.02■□□□□ 0.96
CDH4P55283 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDH4P55283 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.01■□□□□ 0.95
CDH4P55283 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDH4P55283 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDH4P55283 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDH4P55283 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDH4P55283 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDH4P55283 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.01■□□□□ 0.95
CDH4P55283 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.01■□□□□ 0.95
CDH4P55283 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.01■□□□□ 0.95
CDH4P55283 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDH4P55283 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.01■□□□□ 0.95
CDH4P55283 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.01■□□□□ 0.95
CDH4P55283 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDH4P55283 AC105020.6-201ENST00000621523 1217 ntBASIC21.01■□□□□ 0.95
CDH4P55283 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.01■□□□□ 0.95
CDH4P55283 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDH4P55283 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDH4P55283 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CDH4P55283 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CDH4P55283 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDH4P55283 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDH4P55283 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21■□□□□ 0.95
CDH4P55283 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDH4P55283 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDH4P55283 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21■□□□□ 0.95
CDH4P55283 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21■□□□□ 0.95
CDH4P55283 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21■□□□□ 0.95
CDH4P55283 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDH4P55283 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21■□□□□ 0.95
CDH4P55283 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CDH4P55283 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDH4P55283 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDH4P55283 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDH4P55283 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.99■□□□□ 0.95
CDH4P55283 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CDH4P55283 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDH4P55283 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.99■□□□□ 0.95
CDH4P55283 DUSP5P2-201ENST00000426873 1033 ntBASIC20.99■□□□□ 0.95
CDH4P55283 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.99■□□□□ 0.95
CDH4P55283 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.99■□□□□ 0.95
CDH4P55283 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.99■□□□□ 0.95
CDH4P55283 AC091874.3-201ENST00000512672 1195 ntBASIC20.99■□□□□ 0.95
CDH4P55283 AL356652.1-201ENST00000615962 565 ntBASIC20.99■□□□□ 0.95
CDH4P55283 MIR2861-201ENST00000636310 90 ntBASIC20.99■□□□□ 0.95
CDH4P55283 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CDH4P55283 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CDH4P55283 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CDH4P55283 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDH4P55283 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CDH4P55283 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDH4P55283 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CDH4P55283 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CDH4P55283 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDH4P55283 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CDH4P55283 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.98■□□□□ 0.95
CDH4P55283 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH4P55283 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.98■□□□□ 0.95
CDH4P55283 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CDH4P55283 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH4P55283 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CDH4P55283 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDH4P55283 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CDH4P55283 AC097658.1-201ENST00000475555 843 ntBASIC20.98■□□□□ 0.95
CDH4P55283 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.98■□□□□ 0.95
CDH4P55283 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.98■□□□□ 0.95
CDH4P55283 MYC-209ENST00000641252 345 ntBASIC20.98■□□□□ 0.95
CDH4P55283 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDH4P55283 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.98■□□□□ 0.95
CDH4P55283 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDH4P55283 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH4P55283 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.98■□□□□ 0.95
CDH4P55283 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH4P55283 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH4P55283 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CDH4P55283 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms