Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC23.83■■□□□ 1.41
HMGCS2P54868 SERF2-207ENST00000409614 582 ntTSL 2 BASIC23.83■■□□□ 1.41
HMGCS2P54868 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGCS2P54868 ECEL1P3-201ENST00000427961 737 ntBASIC23.83■■□□□ 1.41
HMGCS2P54868 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
HMGCS2P54868 REXO2-216ENST00000544196 452 ntTSL 3 BASIC23.83■■□□□ 1.41
HMGCS2P54868 AC005829.2-201ENST00000571422 1056 ntBASIC23.83■■□□□ 1.41
HMGCS2P54868 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC23.83■■□□□ 1.41
HMGCS2P54868 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
HMGCS2P54868 BRWD1-AS2-201ENST00000603064 1028 ntBASIC23.83■■□□□ 1.41
HMGCS2P54868 AC124016.1-201ENST00000609552 612 ntBASIC23.83■■□□□ 1.41
HMGCS2P54868 AC120498.8-201ENST00000614275 531 ntBASIC23.83■■□□□ 1.41
HMGCS2P54868 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
HMGCS2P54868 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
HMGCS2P54868 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGCS2P54868 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
HMGCS2P54868 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
HMGCS2P54868 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC23.83■■□□□ 1.4
HMGCS2P54868 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.82■■□□□ 1.4
HMGCS2P54868 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGCS2P54868 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.82■■□□□ 1.4
HMGCS2P54868 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC23.82■■□□□ 1.4
HMGCS2P54868 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
HMGCS2P54868 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC23.82■■□□□ 1.4
HMGCS2P54868 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGCS2P54868 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGCS2P54868 PGM5P4-201ENST00000421970 445 ntBASIC23.82■■□□□ 1.4
HMGCS2P54868 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGCS2P54868 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC23.82■■□□□ 1.4
HMGCS2P54868 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGCS2P54868 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGCS2P54868 GOLGA2P6-201ENST00000340929 2049 ntBASIC23.82■■□□□ 1.4
HMGCS2P54868 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC23.82■■□□□ 1.4
HMGCS2P54868 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.82■■□□□ 1.4
HMGCS2P54868 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGCS2P54868 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGCS2P54868 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGCS2P54868 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGCS2P54868 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGCS2P54868 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGCS2P54868 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGCS2P54868 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
HMGCS2P54868 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
HMGCS2P54868 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
HMGCS2P54868 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
HMGCS2P54868 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGCS2P54868 AL356652.1-201ENST00000615962 565 ntBASIC23.81■■□□□ 1.4
HMGCS2P54868 GUSBP5-202ENST00000510805 1989 ntBASIC23.81■■□□□ 1.4
HMGCS2P54868 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGCS2P54868 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGCS2P54868 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC23.81■■□□□ 1.4
HMGCS2P54868 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
HMGCS2P54868 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
HMGCS2P54868 AC239809.2-201ENST00000415381 517 ntBASIC23.8■■□□□ 1.4
HMGCS2P54868 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC23.8■■□□□ 1.4
HMGCS2P54868 AC012618.2-201ENST00000428058 849 ntBASIC23.8■■□□□ 1.4
HMGCS2P54868 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC23.8■■□□□ 1.4
HMGCS2P54868 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC23.8■■□□□ 1.4
HMGCS2P54868 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC23.8■■□□□ 1.4
HMGCS2P54868 AC233702.5-201ENST00000584107 538 ntBASIC23.8■■□□□ 1.4
HMGCS2P54868 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGCS2P54868 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.8■■□□□ 1.4
HMGCS2P54868 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC23.8■■□□□ 1.4
HMGCS2P54868 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC23.79■■□□□ 1.4
HMGCS2P54868 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGCS2P54868 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGCS2P54868 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.79■■□□□ 1.4
HMGCS2P54868 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.79■■□□□ 1.4
HMGCS2P54868 RPS2P55-201ENST00000397318 883 ntBASIC23.79■■□□□ 1.4
HMGCS2P54868 ABHD17AP6-201ENST00000458502 1044 ntBASIC23.79■■□□□ 1.4
HMGCS2P54868 AC133681.1-201ENST00000465482 601 ntBASIC23.79■■□□□ 1.4
HMGCS2P54868 AC107956.1-201ENST00000494359 873 ntBASIC23.79■■□□□ 1.4
HMGCS2P54868 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC23.79■■□□□ 1.4
HMGCS2P54868 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC23.79■■□□□ 1.4
HMGCS2P54868 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGCS2P54868 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC23.79■■□□□ 1.4
HMGCS2P54868 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGCS2P54868 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.79■■□□□ 1.4
HMGCS2P54868 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC23.78■■□□□ 1.4
HMGCS2P54868 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC23.78■■□□□ 1.4
HMGCS2P54868 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms