Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC28.67■■■□□ 2.18
MSH6P52701 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC28.67■■■□□ 2.18
MSH6P52701 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC28.67■■■□□ 2.18
MSH6P52701 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
MSH6P52701 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC28.67■■■□□ 2.18
MSH6P52701 LINC01568-207ENST00000641790 1380 ntBASIC28.67■■■□□ 2.18
MSH6P52701 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC28.67■■■□□ 2.18
MSH6P52701 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
MSH6P52701 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
MSH6P52701 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
MSH6P52701 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
MSH6P52701 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
MSH6P52701 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC28.66■■■□□ 2.18
MSH6P52701 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC28.66■■■□□ 2.18
MSH6P52701 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC28.66■■■□□ 2.18
MSH6P52701 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC28.66■■■□□ 2.18
MSH6P52701 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC28.66■■■□□ 2.18
MSH6P52701 AP000525.1-201ENST00000608286 694 ntBASIC28.66■■■□□ 2.18
MSH6P52701 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
MSH6P52701 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC28.66■■■□□ 2.18
MSH6P52701 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC28.66■■■□□ 2.18
MSH6P52701 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC28.66■■■□□ 2.18
MSH6P52701 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
MSH6P52701 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
MSH6P52701 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
MSH6P52701 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
MSH6P52701 DUX4L26-201ENST00000489078 1255 ntBASIC28.65■■■□□ 2.18
MSH6P52701 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC28.65■■■□□ 2.18
MSH6P52701 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC28.65■■■□□ 2.18
MSH6P52701 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC28.65■■■□□ 2.18
MSH6P52701 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
MSH6P52701 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC28.65■■■□□ 2.18
MSH6P52701 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
MSH6P52701 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
MSH6P52701 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
MSH6P52701 NFE2L3P1-201ENST00000588207 1959 ntBASIC28.64■■■□□ 2.18
MSH6P52701 UNC93B2-201ENST00000285383 730 ntBASIC28.64■■■□□ 2.18
MSH6P52701 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
MSH6P52701 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC28.64■■■□□ 2.18
MSH6P52701 KRT16P5-201ENST00000455284 522 ntBASIC28.64■■■□□ 2.18
MSH6P52701 NUDT16P1-203ENST00000513809 620 ntBASIC28.64■■■□□ 2.18
MSH6P52701 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
MSH6P52701 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC28.64■■■□□ 2.18
MSH6P52701 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC28.64■■■□□ 2.18
MSH6P52701 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
MSH6P52701 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
MSH6P52701 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
MSH6P52701 AC073508.3-201ENST00000619697 1419 ntBASIC28.64■■■□□ 2.18
MSH6P52701 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.17
MSH6P52701 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.17
MSH6P52701 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.17
MSH6P52701 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
MSH6P52701 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC28.63■■■□□ 2.17
MSH6P52701 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
MSH6P52701 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC28.63■■■□□ 2.17
MSH6P52701 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC28.63■■■□□ 2.17
MSH6P52701 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC28.63■■■□□ 2.17
MSH6P52701 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC28.63■■■□□ 2.17
MSH6P52701 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC28.63■■■□□ 2.17
MSH6P52701 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
MSH6P52701 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
MSH6P52701 AC116050.2-201ENST00000612102 1779 ntBASIC28.63■■■□□ 2.17
MSH6P52701 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC28.63■■■□□ 2.17
MSH6P52701 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
MSH6P52701 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
MSH6P52701 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
MSH6P52701 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
MSH6P52701 AL137013.1-201ENST00000432946 1228 ntBASIC28.62■■■□□ 2.17
MSH6P52701 AC087388.1-201ENST00000571370 1112 ntBASIC28.62■■■□□ 2.17
MSH6P52701 AL031963.3-201ENST00000606441 850 ntBASIC28.62■■■□□ 2.17
MSH6P52701 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
MSH6P52701 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC28.62■■■□□ 2.17
MSH6P52701 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC28.62■■■□□ 2.17
MSH6P52701 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
MSH6P52701 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
MSH6P52701 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
MSH6P52701 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC28.62■■■□□ 2.17
MSH6P52701 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC28.62■■■□□ 2.17
MSH6P52701 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
MSH6P52701 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC28.62■■■□□ 2.17
MSH6P52701 REXO1L10P-201ENST00000615707 1290 ntBASIC28.62■■■□□ 2.17
MSH6P52701 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
MSH6P52701 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
MSH6P52701 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
MSH6P52701 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
MSH6P52701 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
MSH6P52701 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
MSH6P52701 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
MSH6P52701 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
MSH6P52701 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
MSH6P52701 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
MSH6P52701 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
MSH6P52701 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
MSH6P52701 MIR1238-201ENST00000408483 83 ntBASIC28.61■■■□□ 2.17
MSH6P52701 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC28.61■■■□□ 2.17
MSH6P52701 CFL2-205ENST00000555765 632 ntTSL 2 BASIC28.61■■■□□ 2.17
MSH6P52701 AC073195.1-201ENST00000607241 877 ntBASIC28.61■■■□□ 2.17
MSH6P52701 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC28.61■■■□□ 2.17
MSH6P52701 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC28.61■■■□□ 2.17
MSH6P52701 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms