Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 OR10C1-204ENST00000622521 1039 ntBASIC20.07■□□□□ 0.8
SHMT2P34897 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHMT2P34897 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SHMT2P34897 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SHMT2P34897 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.07■□□□□ 0.8
SHMT2P34897 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.07■□□□□ 0.8
SHMT2P34897 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHMT2P34897 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHMT2P34897 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.06■□□□□ 0.8
SHMT2P34897 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SHMT2P34897 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHMT2P34897 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SHMT2P34897 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.06■□□□□ 0.8
SHMT2P34897 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.06■□□□□ 0.8
SHMT2P34897 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.06■□□□□ 0.8
SHMT2P34897 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.06■□□□□ 0.8
SHMT2P34897 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SHMT2P34897 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHMT2P34897 FAM21FP-204ENST00000608637 956 ntBASIC20.06■□□□□ 0.8
SHMT2P34897 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.06■□□□□ 0.8
SHMT2P34897 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHMT2P34897 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHMT2P34897 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.06■□□□□ 0.8
SHMT2P34897 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.06■□□□□ 0.8
SHMT2P34897 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
SHMT2P34897 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.06■□□□□ 0.8
SHMT2P34897 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHMT2P34897 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.05■□□□□ 0.8
SHMT2P34897 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHMT2P34897 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHMT2P34897 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SHMT2P34897 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHMT2P34897 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SHMT2P34897 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHMT2P34897 AC007322.3-201ENST00000426526 701 ntBASIC20.05■□□□□ 0.8
SHMT2P34897 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.05■□□□□ 0.8
SHMT2P34897 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.05■□□□□ 0.8
SHMT2P34897 LINC01521-201ENST00000504184 1943 ntBASIC20.05■□□□□ 0.8
SHMT2P34897 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHMT2P34897 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.05■□□□□ 0.8
SHMT2P34897 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHMT2P34897 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SHMT2P34897 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
SHMT2P34897 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 ID1-201ENST00000376105 1233 ntBASIC20.04■□□□□ 0.8
SHMT2P34897 GPX1P1-201ENST00000388829 606 ntBASIC20.04■□□□□ 0.8
SHMT2P34897 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.04■□□□□ 0.8
SHMT2P34897 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.04■□□□□ 0.8
SHMT2P34897 RARRES2P4-201ENST00000514074 484 ntBASIC20.04■□□□□ 0.8
SHMT2P34897 AF201337.1-201ENST00000520239 748 ntBASIC20.04■□□□□ 0.8
SHMT2P34897 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.04■□□□□ 0.8
SHMT2P34897 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SHMT2P34897 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.04■□□□□ 0.8
SHMT2P34897 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHMT2P34897 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.04■□□□□ 0.8
SHMT2P34897 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.03■□□□□ 0.8
SHMT2P34897 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHMT2P34897 AC116050.2-201ENST00000612102 1779 ntBASIC20.03■□□□□ 0.8
SHMT2P34897 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHMT2P34897 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SHMT2P34897 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHMT2P34897 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHMT2P34897 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.03■□□□□ 0.8
SHMT2P34897 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHMT2P34897 AC083906.2-201ENST00000511578 360 ntBASIC20.03■□□□□ 0.8
SHMT2P34897 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.03■□□□□ 0.8
SHMT2P34897 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.03■□□□□ 0.8
SHMT2P34897 AC016405.3-201ENST00000607710 860 ntBASIC20.03■□□□□ 0.8
SHMT2P34897 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.03■□□□□ 0.8
SHMT2P34897 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.03■□□□□ 0.8
SHMT2P34897 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.03■□□□□ 0.8
SHMT2P34897 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SHMT2P34897 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHMT2P34897 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHMT2P34897 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SHMT2P34897 FEM1AP4-201ENST00000443167 1987 ntBASIC20.03■□□□□ 0.8
SHMT2P34897 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHMT2P34897 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SHMT2P34897 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHMT2P34897 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHMT2P34897 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SHMT2P34897 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHMT2P34897 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
SHMT2P34897 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHMT2P34897 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SHMT2P34897 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHMT2P34897 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHMT2P34897 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms