Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN4P29074 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN4P29074 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
PTPN4P29074 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.53■□□□□ 0.88
PTPN4P29074 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.53■□□□□ 0.88
PTPN4P29074 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.53■□□□□ 0.88
PTPN4P29074 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
PTPN4P29074 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN4P29074 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN4P29074 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN4P29074 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN4P29074 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN4P29074 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN4P29074 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN4P29074 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.52■□□□□ 0.88
PTPN4P29074 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN4P29074 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN4P29074 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN4P29074 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN4P29074 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.52■□□□□ 0.88
PTPN4P29074 SMUG1P1-201ENST00000590640 811 ntBASIC20.52■□□□□ 0.88
PTPN4P29074 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
PTPN4P29074 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN4P29074 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN4P29074 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
PTPN4P29074 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.51■□□□□ 0.87
PTPN4P29074 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN4P29074 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.51■□□□□ 0.87
PTPN4P29074 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN4P29074 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN4P29074 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.51■□□□□ 0.87
PTPN4P29074 AC137761.2-201ENST00000561729 223 ntBASIC20.51■□□□□ 0.87
PTPN4P29074 AC145350.3-201ENST00000569033 163 ntBASIC20.51■□□□□ 0.87
PTPN4P29074 KRT18P61-201ENST00000585825 1298 ntBASIC20.51■□□□□ 0.87
PTPN4P29074 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.51■□□□□ 0.87
PTPN4P29074 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
PTPN4P29074 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN4P29074 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN4P29074 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN4P29074 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.51■□□□□ 0.87
PTPN4P29074 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN4P29074 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN4P29074 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN4P29074 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN4P29074 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN4P29074 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN4P29074 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN4P29074 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.5■□□□□ 0.87
PTPN4P29074 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN4P29074 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN4P29074 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
PTPN4P29074 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN4P29074 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN4P29074 AC016769.1-201ENST00000409132 1010 ntBASIC20.5■□□□□ 0.87
PTPN4P29074 AC006015.1-201ENST00000429970 570 ntBASIC20.5■□□□□ 0.87
PTPN4P29074 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
PTPN4P29074 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN4P29074 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.5■□□□□ 0.87
PTPN4P29074 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN4P29074 AP004607.4-201ENST00000530158 1459 ntBASIC20.5■□□□□ 0.87
PTPN4P29074 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.49■□□□□ 0.87
PTPN4P29074 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.49■□□□□ 0.87
PTPN4P29074 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.49■□□□□ 0.87
PTPN4P29074 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN4P29074 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN4P29074 ID1-201ENST00000376105 1233 ntBASIC20.49■□□□□ 0.87
PTPN4P29074 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.49■□□□□ 0.87
PTPN4P29074 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN4P29074 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.49■□□□□ 0.87
PTPN4P29074 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN4P29074 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
PTPN4P29074 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
PTPN4P29074 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN4P29074 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
PTPN4P29074 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.48■□□□□ 0.87
PTPN4P29074 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
PTPN4P29074 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.48■□□□□ 0.87
PTPN4P29074 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.48■□□□□ 0.87
PTPN4P29074 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
PTPN4P29074 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.48■□□□□ 0.87
PTPN4P29074 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
PTPN4P29074 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
PTPN4P29074 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.48■□□□□ 0.87
PTPN4P29074 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.48■□□□□ 0.87
PTPN4P29074 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
PTPN4P29074 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.48■□□□□ 0.87
PTPN4P29074 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms