Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 EEF1DP3-203ENST00000566025 782 ntBASIC18.23■□□□□ 0.51
LIMS3P0CW19 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.23■□□□□ 0.51
LIMS3P0CW19 AL158211.5-201ENST00000623583 2518 ntBASIC18.23■□□□□ 0.51
LIMS3P0CW19 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LIMS3P0CW19 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMS3P0CW19 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMS3P0CW19 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMS3P0CW19 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.23■□□□□ 0.51
LIMS3P0CW19 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMS3P0CW19 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.22■□□□□ 0.51
LIMS3P0CW19 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.22■□□□□ 0.51
LIMS3P0CW19 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.22■□□□□ 0.51
LIMS3P0CW19 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.22■□□□□ 0.51
LIMS3P0CW19 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.22■□□□□ 0.51
LIMS3P0CW19 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.22■□□□□ 0.51
LIMS3P0CW19 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.22■□□□□ 0.51
LIMS3P0CW19 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIMS3P0CW19 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMS3P0CW19 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 AC098818.2-201ENST00000564925 2320 ntBASIC18.21■□□□□ 0.51
LIMS3P0CW19 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LIMS3P0CW19 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
LIMS3P0CW19 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMS3P0CW19 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMS3P0CW19 AC053503.5-201ENST00000601508 636 ntBASIC18.21■□□□□ 0.51
LIMS3P0CW19 AC233992.3-201ENST00000607491 485 ntBASIC18.21■□□□□ 0.51
LIMS3P0CW19 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMS3P0CW19 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
LIMS3P0CW19 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMS3P0CW19 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMS3P0CW19 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LIMS3P0CW19 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.2■□□□□ 0.5
LIMS3P0CW19 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 MIR4767-201ENST00000582827 78 ntBASIC18.2■□□□□ 0.5
LIMS3P0CW19 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LIMS3P0CW19 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMS3P0CW19 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMS3P0CW19 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
LIMS3P0CW19 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 AC126544.1-201ENST00000580842 1059 ntBASIC18.19■□□□□ 0.5
LIMS3P0CW19 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
LIMS3P0CW19 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMS3P0CW19 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms