Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
TOP3BO95985 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.96■□□□□ 0.95
TOP3BO95985 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TOP3BO95985 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
TOP3BO95985 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TOP3BO95985 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TOP3BO95985 RPS2P4-201ENST00000476944 856 ntBASIC20.96■□□□□ 0.95
TOP3BO95985 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.96■□□□□ 0.95
TOP3BO95985 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.96■□□□□ 0.95
TOP3BO95985 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TOP3BO95985 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
TOP3BO95985 AL034346.1-201ENST00000568244 1277 ntBASIC20.96■□□□□ 0.95
TOP3BO95985 AC133552.2-202ENST00000575694 574 ntBASIC20.96■□□□□ 0.95
TOP3BO95985 MYCNOS-205ENST00000641950 531 ntBASIC20.96■□□□□ 0.95
TOP3BO95985 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TOP3BO95985 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TOP3BO95985 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TOP3BO95985 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TOP3BO95985 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TOP3BO95985 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.95
TOP3BO95985 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.95■□□□□ 0.95
TOP3BO95985 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.95■□□□□ 0.94
TOP3BO95985 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
TOP3BO95985 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.95■□□□□ 0.94
TOP3BO95985 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 RARRES2P4-201ENST00000514074 484 ntBASIC20.95■□□□□ 0.94
TOP3BO95985 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.95■□□□□ 0.94
TOP3BO95985 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.95■□□□□ 0.94
TOP3BO95985 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.95■□□□□ 0.94
TOP3BO95985 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.95■□□□□ 0.94
TOP3BO95985 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.95■□□□□ 0.94
TOP3BO95985 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TOP3BO95985 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TOP3BO95985 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.94■□□□□ 0.94
TOP3BO95985 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
TOP3BO95985 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TOP3BO95985 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.94■□□□□ 0.94
TOP3BO95985 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
TOP3BO95985 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TOP3BO95985 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TOP3BO95985 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TOP3BO95985 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.94■□□□□ 0.94
TOP3BO95985 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TOP3BO95985 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TOP3BO95985 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.94■□□□□ 0.94
TOP3BO95985 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
TOP3BO95985 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TOP3BO95985 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
TOP3BO95985 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TOP3BO95985 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TOP3BO95985 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TOP3BO95985 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
TOP3BO95985 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TOP3BO95985 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.93■□□□□ 0.94
TOP3BO95985 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.93■□□□□ 0.94
TOP3BO95985 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.93■□□□□ 0.94
TOP3BO95985 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TOP3BO95985 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.93■□□□□ 0.94
TOP3BO95985 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
TOP3BO95985 MIR4758-201ENST00000577688 71 ntBASIC20.93■□□□□ 0.94
TOP3BO95985 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.93■□□□□ 0.94
TOP3BO95985 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.93■□□□□ 0.94
TOP3BO95985 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TOP3BO95985 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.92■□□□□ 0.94
TOP3BO95985 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TOP3BO95985 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
TOP3BO95985 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.92■□□□□ 0.94
TOP3BO95985 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.92■□□□□ 0.94
TOP3BO95985 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TOP3BO95985 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TOP3BO95985 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TOP3BO95985 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
TOP3BO95985 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TOP3BO95985 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.92■□□□□ 0.94
TOP3BO95985 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.92■□□□□ 0.94
TOP3BO95985 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.92■□□□□ 0.94
TOP3BO95985 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TOP3BO95985 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TOP3BO95985 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TOP3BO95985 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.92■□□□□ 0.94
TOP3BO95985 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TOP3BO95985 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.92■□□□□ 0.94
TOP3BO95985 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TOP3BO95985 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TOP3BO95985 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TOP3BO95985 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TOP3BO95985 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TOP3BO95985 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms