Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SLC28A1O00337 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SLC28A1O00337 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SLC28A1O00337 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SLC28A1O00337 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
SLC28A1O00337 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SLC28A1O00337 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.74■□□□□ 0.75
SLC28A1O00337 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SLC28A1O00337 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.74■□□□□ 0.75
SLC28A1O00337 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.74■□□□□ 0.75
SLC28A1O00337 SLC7A5P2-201ENST00000553010 536 ntBASIC19.74■□□□□ 0.75
SLC28A1O00337 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.74■□□□□ 0.75
SLC28A1O00337 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
SLC28A1O00337 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SLC28A1O00337 AL512408.1-201ENST00000569378 2000 ntBASIC19.74■□□□□ 0.75
SLC28A1O00337 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SLC28A1O00337 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.74■□□□□ 0.75
SLC28A1O00337 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.74■□□□□ 0.75
SLC28A1O00337 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.74■□□□□ 0.75
SLC28A1O00337 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.74■□□□□ 0.75
SLC28A1O00337 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
SLC28A1O00337 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SLC28A1O00337 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SLC28A1O00337 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SLC28A1O00337 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SLC28A1O00337 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SLC28A1O00337 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.73■□□□□ 0.75
SLC28A1O00337 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SLC28A1O00337 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.73■□□□□ 0.75
SLC28A1O00337 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SLC28A1O00337 KRT18P20-201ENST00000548986 1279 ntBASIC19.73■□□□□ 0.75
SLC28A1O00337 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SLC28A1O00337 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.73■□□□□ 0.75
SLC28A1O00337 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SLC28A1O00337 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SLC28A1O00337 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SLC28A1O00337 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SLC28A1O00337 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SLC28A1O00337 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SLC28A1O00337 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SLC28A1O00337 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SLC28A1O00337 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SLC28A1O00337 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SLC28A1O00337 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.72■□□□□ 0.75
SLC28A1O00337 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.72■□□□□ 0.75
SLC28A1O00337 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.72■□□□□ 0.75
SLC28A1O00337 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.72■□□□□ 0.75
SLC28A1O00337 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.72■□□□□ 0.75
SLC28A1O00337 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SLC28A1O00337 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.72■□□□□ 0.75
SLC28A1O00337 CCDC92B-201ENST00000575506 885 ntBASIC19.72■□□□□ 0.75
SLC28A1O00337 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SLC28A1O00337 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SLC28A1O00337 AL121603.2-201ENST00000557373 2117 ntBASIC19.72■□□□□ 0.75
SLC28A1O00337 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
SLC28A1O00337 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.72■□□□□ 0.75
SLC28A1O00337 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SLC28A1O00337 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SLC28A1O00337 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SLC28A1O00337 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.71■□□□□ 0.75
SLC28A1O00337 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SLC28A1O00337 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SLC28A1O00337 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SLC28A1O00337 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SLC28A1O00337 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SLC28A1O00337 MIR638-201ENST00000385237 100 ntBASIC19.71■□□□□ 0.75
SLC28A1O00337 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.71■□□□□ 0.75
SLC28A1O00337 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.71■□□□□ 0.75
SLC28A1O00337 TERF1P2-201ENST00000583350 1212 ntBASIC19.71■□□□□ 0.75
SLC28A1O00337 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.71■□□□□ 0.75
SLC28A1O00337 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.71■□□□□ 0.75
SLC28A1O00337 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.71■□□□□ 0.75
SLC28A1O00337 MIR2861-201ENST00000636310 90 ntBASIC19.71■□□□□ 0.75
SLC28A1O00337 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
SLC28A1O00337 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
SLC28A1O00337 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SLC28A1O00337 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.71■□□□□ 0.75
SLC28A1O00337 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
SLC28A1O00337 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SLC28A1O00337 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SLC28A1O00337 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.71■□□□□ 0.75
SLC28A1O00337 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SLC28A1O00337 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC28A1O00337 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.7■□□□□ 0.74
SLC28A1O00337 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.7■□□□□ 0.74
SLC28A1O00337 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.7■□□□□ 0.74
SLC28A1O00337 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC28A1O00337 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SLC28A1O00337 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC28A1O00337 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC28A1O00337 YBX1P1-201ENST00000445822 960 ntBASIC19.7■□□□□ 0.74
SLC28A1O00337 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.7■□□□□ 0.74
SLC28A1O00337 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.7■□□□□ 0.74
SLC28A1O00337 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.7■□□□□ 0.74
SLC28A1O00337 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
SLC28A1O00337 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC28A1O00337 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SLC28A1O00337 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC28A1O00337 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.7■□□□□ 0.74
SLC28A1O00337 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms