Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 AC123595.1-201ENST00000440769 1046 ntBASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 CCDC92B-201ENST00000575506 885 ntBASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 AC004854.2-201ENST00000608450 1441 ntBASIC20.87■□□□□ 0.93
TCRBV7S3A2A0A539 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 YBX1P1-201ENST00000445822 960 ntBASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 KRT18P61-201ENST00000585825 1298 ntBASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 AC092720.2-201ENST00000602388 1665 ntBASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TCRBV7S3A2A0A539 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 AC116050.2-201ENST00000612102 1779 ntBASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 AC120498.10-201ENST00000621827 505 ntBASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
TCRBV7S3A2A0A539 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 ZNRF2P3-201ENST00000424200 374 ntBASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 KRT18P14-201ENST00000534205 1250 ntBASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 MIR2861-201ENST00000636310 90 ntBASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.84■□□□□ 0.93
TCRBV7S3A2A0A539 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TCRBV7S3A2A0A539 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms